Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09880 519 / 0 Splicing factor, CC1-like (.1) AT2G16940 429 / 2e-144 Splicing factor, CC1-like (.1.2.3) AT5G54900 76 / 1e-14 ATRBP45A RNA-binding protein 45A (.1) AT1G48920 74 / 7e-14 ATNUC-L1, PARL1 PARALLEL 1, nucleolin like 1 (.1) AT3G14100 74 / 8e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G52380 72 / 2e-13 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT1G60900 72 / 6e-13 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) AT4G34110 71 / 1e-12 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT2G35410 69 / 2e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G37220 68 / 2e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002093 [exp] 700 / 0 AT5G09880 600 / 0.0 Splicing factor, CC1-like (.1) Lus10034466 [exp] 441 / 2e-148 AT2G16940 569 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10025075 [exp] 429 / 1e-144 AT2G16940 565 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10027830 [exp] 403 / 3e-135 AT2G16940 553 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10005059 [exp] 396 / 3e-132 AT2G16940 534 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10029372 [exp] 79 / 1e-15 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10016174 [exp] 73 / 9e-14 AT3G52380 275 / 3e-91 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10026514 [exp] 72 / 2e-13 AT2G37220 284 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10018277 [exp] 73 / 3e-13 AT4G19610 770 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G148100 [exp] 583 / 0 AT5G09880 553 / 0.0 Splicing factor, CC1-like (.1) Potri.007G009800 [exp] 577 / 0 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1) Potri.004G177000 [exp] 465 / 2e-158 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.009G137200 [exp] 462 / 2e-157 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.003G149600 [exp] 77 / 1e-14 AT4G19610 646 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Potri.004G040900 [exp] 76 / 2e-14 AT1G60900 541 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.016G090700 [exp] 74 / 2e-14 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G127200 [exp] 73 / 4e-14 AT2G37220 269 / 5e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G050400 [exp] 73 / 2e-13 AT1G60900 532 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.011G138400 [exp] 72 / 3e-13 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10000826 pacid=23170686 polypeptide=Lus10000826 locus=Lus10000826.g ID=Lus10000826.BGIv1.0 annot-version=v1.0 ATGGAGTTCGACGAGATTGAGTATTTGGAGAAAACAGTAGAAGAAGCGGAGGATCGAGAAGGAAGCGCGAAGAAAAAGGAAGATGGCGCCACGGAGAAGG GCGACAGGAGTTACCGGAAGCGGCATTCGGATGACGACGGGGACAGGAAGAGATCGAGAGGAGGAAGAGGCGGCGACGACGAGGAGAATGGCGATGGGGA GAAGGACAGGCATCGCCGCGATAGAGATATAGAGGACCTTGATAGGGGGAGGAGAGATCGGGATAAGGAGAGAAGGGAGAGGAGGGATAAGGGACGAGAG GAGGAAAGGGAGAGGAGGGAGAGGAGCAGGAGTAAGAGTAAGAGCCGGCGGGAAAGAAGCAGGAGCAGGAGTAGAAGCAAGTCGAGGAGGGAGAGAAGCA GGAGTAGGTACAGTGATAGGGAGAAGGAGGTACGAGAGAGGGAAAGGGATGTTGAGCTTCGGGACAGCAGTAGCAGGAGGACTAAAGACAAGAAAGAAGG TATGGAGCCTGAAGCTGATCCTGAGAGGGATCAGAGAACTGTATTTGCCTATCAGATGCCTTTGAAGGCCACTGAGCGAGATGTATATGAGTTCTTTACA AAAGCAGGCAAGGTGAGGGATGTTCGACTGATAATGGATAGGAACTCGAGGCGATCAAAAGGAGTTGGGTACATTGAGTTCTATGATGTAATGTCTGTCC CAATGGCGATAGCTTTCTCGGGCCAACTACTCTTTGGACAACCTGTGATGGTGAAGCCTTCAGAGGCTAAAAAGAACCTTGTTCAGTCAAATGCTTCTGG TGCTACTACTGGAGCATATGGACCAGTGGATCGGAAACTCTATGTTGGGAATTTGCATTTCAACATGACAGAAGTGCAGCTGAGACAGCTTTTTGAGCCA TTTGGAACTGTGGAGCTTGTGCAACTACCGCTTGACCTTGAGACGGGGCAATGCAAGGGATTTGGGTTTGTTCAATTTGCTCAACCTGAAAGTGCCAAGG AAGCTCAGACACATTTGAATGGGAAACTGGAGATTGCTGGCCGAACCTTAAAGGTTTCCTCTGTCACGGAACAGGGAGCACAGCACGATCTCGGGGCAAA ATCTGCAGACTTCGATGATGATGACGGCGGTGGTTTGTCTTTGAATGCCCAGTCAAGAGCAATGCTTATGCAGAAACTGGATCGCTCTGGCATTGCCACG AGTATCTCTAGCTCCTTTGGAGTGCCTATGCTAAATGGCTCTTCTCAAACACCACAAACTATGACCTTACCGATTAACGGTCAAGCTGCACTTGGAGGAG CCCTTCCGGTGCATGTCTTGCCTGCACAGGCATATCAATATATTGGGAGACCCAGCGAGTGCTTACTGTTGCAAAACATGTTTGATCCGTCGACCGAGAC GGAGCCCGATTTTGATCTGGACATAAAGGATGATGTTGATGAAGAATGTTCAAAATACGGCCGTGTGAAACATATATACGTCGAGAAGAACAGCTCTGGG TTTGTGTACTTACGGTTCGATACTGTGGAAGGAGCTGCTAGAGCTCAGGCTGCAATGCATATGAGGTGGTTTGCCCGACGATCGATCTCTGCAACTTTCA TGGTAAGCAAAGTTGTGTTTTCCATCTAG
AA sequence Show only first row Show all	>Lus10000826 pacid=23170686 polypeptide=Lus10000826 locus=Lus10000826.g ID=Lus10000826.BGIv1.0 annot-version=v1.0 MEFDEIEYLEKTVEEAEDREGSAKKKEDGATEKGDRSYRKRHSDDDGDRKRSRGGRGGDDEENGDGEKDRHRRDRDIEDLDRGRRDRDKERRERRDKGRE EERERRERSRSKSKSRRERSRSRSRSKSRRERSRSRYSDREKEVRERERDVELRDSSSRRTKDKKEGMEPEADPERDQRTVFAYQMPLKATERDVYEFFT KAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIAFSGQLLFGQPVMVKPSEAKKNLVQSNASGATTGAYGPVDRKLYVGNLHFNMTEVQLRQLFEP FGTVELVQLPLDLETGQCKGFGFVQFAQPESAKEAQTHLNGKLEIAGRTLKVSSVTEQGAQHDLGAKSADFDDDDGGGLSLNAQSRAMLMQKLDRSGIAT SISSSFGVPMLNGSSQTPQTMTLPINGQAALGGALPVHVLPAQAYQYIGRPSECLLLQNMFDPSTETEPDFDLDIKDDVDEECSKYGRVKHIYVEKNSSG FVYLRFDTVEGAARAQAAMHMRWFARRSISATFMVSKVVFSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09880			Splicing factor, CC1-like (.1)		Lus10000826 [exp]	0	1
AT5G09880			Splicing factor, CC1-like (.1)		Lus10002093 [exp]	1.0	0.9664
AT4G13340		LRX3	leucine-rich repeat/extensin 3...		Lus10037905 [exp]	2.8	0.8255
AT1G61470			Polynucleotidyl transferase, r...		Lus10007771 [exp]	4.9	0.8096
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10028201 [exp]	7.7	0.8542
AT1G60200			splicing factor PWI domain-con...		Lus10013003 [exp]	8.5	0.7861
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10028354 [exp]	11.6	0.8410
AT5G05340			Peroxidase superfamily protein...		Lus10034204 [exp]	11.7	0.7964
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Lus10002182 [exp]	12.0	0.8150
AT4G13450			Adenine nucleotide alpha hydro...		Lus10023716 [exp]	12.0	0.8251
AT1G19780		ATCNGC8	cyclic nucleotide gated channe...		Lus10024073 [exp]	12.4	0.7778

Compare expression of checked genes

Lus10000826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.