Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33460 329 / 3e-114 ABCI10, ATNAP13, EMB2751 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) AT1G65410 71 / 6e-14 ABCI13, TGD3, ATNAP11 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) AT1G27940 70 / 2e-13 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT3G62150 67 / 3e-12 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT2G47000 65 / 1e-11 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT1G28010 65 / 1e-11 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT2G36910 63 / 5e-11 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT4G01830 63 / 5e-11 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT3G28345 62 / 7e-11 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT3G28390 62 / 9e-11 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002094 [exp] 442 / 3e-159 AT4G33460 304 / 9e-105 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) Lus10035195 [exp] 72 / 2e-14 AT5G14100 333 / 2e-115 ARABIDOPSIS THALIANANON-INTRINSIC ABC PROTEIN 14, ATP-binding cassette I11, non-intrinsic ABC protein 14 (.1) Lus10004583 [exp] 70 / 3e-13 AT4G18050 1660 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Lus10010074 [exp] 69 / 5e-13 AT1G02520 1591 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10020188 [exp] 68 / 6e-13 AT1G65410 500 / 2e-179 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Lus10005249 [exp] 67 / 2e-12 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10030674 [exp] 67 / 4e-12 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10026992 [exp] 66 / 5e-12 AT1G65410 476 / 2e-169 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Lus10022270 [exp] 65 / 1e-11 AT1G70610 738 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G062800 [exp] 381 / 6e-135 AT4G33460 346 / 5e-121 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) Potri.014G137000 [exp] 66 / 4e-12 AT1G65410 483 / 2e-172 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Potri.016G093600 [exp] 66 / 4e-12 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.002G187400 [exp] 66 / 8e-12 AT3G62150 1702 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113200 [exp] 65 / 1e-11 AT3G62150 1871 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113000 [exp] 65 / 1e-11 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.010G003000 [exp] 65 / 2e-11 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.006G123900 [exp] 64 / 2e-11 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.014G113500 [exp] 64 / 3e-11 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.001G354900 [exp] 64 / 3e-11 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10000827 pacid=23170688 polypeptide=Lus10000827 locus=Lus10000827.g ID=Lus10000827.BGIv1.0 annot-version=v1.0 ATGGATTCTTCTGTTCTTTTTCGTCTCTCGGCTTCTTGTTGCGCCCCTCGCAACTCCACCAATCTCCACCGACGAACCCACTTCACTCCATGCGCATCAT CCGCTGCCGCCATTGAAGCGAAGAATCTCAGCTTCTCAGTCACAACGAAGCAAGGGAATTCGGTCCCCATTCTCCAGGATTGCTCCCTCAAAATCCCTTC CGGTCAGCTCTGGATGCTGCTTGGTCCCAACGGCTGCGGAAAATCTACTCTTCTCAAGGTACTTGCTGGTCTGTTAAATCCTAATGATGGAATTTTCCAT GTCAAGAAGCCTAAGAGCTTCGTTTTCCAGAATCCAGATCATCAGGTTGTCATGCCTACGGTGGAAGCAGATGTATCCTTTGGTCTTGGCAAATTCAACC TCACGAACGATGAAGTTAGGAGCAGGGTCTCGAAAGCTCTTGATGCTGTCGGCATGGCTTCATACATGCAAAGACCTGTTCAAACTCTTAGTGGTGGTCA GAAGCAGAGGGTTGCCATTGCGGGTGCTCTAGCTGAAGCGTGCAAAGTGCTCTTACTTGATGAGCTGACAACATTTCTAGATGAGACCGACCAGATTGGG GTAATCAAAGCTCTGAAGAACACATTACATGTATCAGACGAAGTTACAGCTTTATGGGTAACCCATAGGCTCGAAGAGCTCGAGTATGCAGATGGCGCAT TGTATATGGAGAAGGGGAGAGTAGTCATGAAAGGTGATGGGTCAAGAATAAAGAATTTCATCGAAGCCAGACAAGCCTCTTACATCAACCAGATTAATCA GTGA
AA sequence Show only first row Show all	>Lus10000827 pacid=23170688 polypeptide=Lus10000827 locus=Lus10000827.g ID=Lus10000827.BGIv1.0 annot-version=v1.0 MDSSVLFRLSASCCAPRNSTNLHRRTHFTPCASSAAAIEAKNLSFSVTTKQGNSVPILQDCSLKIPSGQLWMLLGPNGCGKSTLLKVLAGLLNPNDGIFH VKKPKSFVFQNPDHQVVMPTVEADVSFGLGKFNLTNDEVRSRVSKALDAVGMASYMQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDETDQIG VIKALKNTLHVSDEVTALWVTHRLEELEYADGALYMEKGRVVMKGDGSRIKNFIEARQASYINQINQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33460		ABCI10, ATNAP13...	embryo defective 2751, ATP-bin...		Lus10000827 [exp]	0	1
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10039346 [exp]	144.2	0.3422

Compare expression of checked genes

Lus10000827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.