Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74880 159 / 2e-50 NdhO, NDH-O NADH dehydrogenase-like complex \), NAD(P)H:plastoquinone dehydrogenase complex subunit O (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002095 [exp] 261 / 1e-90 AT1G74880 182 / 1e-59 NADH dehydrogenase-like complex \), NAD(P)H:plastoquinone dehydrogenase complex subunit O (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G106500 [exp] 184 / 4e-60 AT1G74880 180 / 6e-59 NADH dehydrogenase-like complex \), NAD(P)H:plastoquinone dehydrogenase complex subunit O (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11910 [flax] [poplar] NdhO Cyanobacterial and plant NDH-1 subunit O
Representative CDS sequence Show only first row Show all	>Lus10000828 pacid=23170691 polypeptide=Lus10000828 locus=Lus10000828.g ID=Lus10000828.BGIv1.0 annot-version=v1.0 ATGGCTGCATTCTCTGCAACGCTATCAAGAACCACCCACGTCCCTCCTCGAATTTATCCATTCCCGCGAAGTAGGTCGACGATTCGGCTTCTGCCAATGA TCAGAGCTGTGAACTCTGCTGAACCAGCAAAGGAGAAGAAGGCAGCCCTGCAGACAAAAGCTGCTGAGCAGGATCCCTCTACTTCTTCTTCAACAACCCC TCAGTTGAAACCTAAGAAGAAGCCAGTTTACTCAATGAAGAAAGGGCAGATTGTGAGAGTTGATAAAGACAAGTACCTCAACAGCATTAATTACTTATCA GTTGGTCATCCACCATATTACAAGGGATTGGATTACATCTATGAAGATCGTGGTGAGGTGCTGGATTTGCGGATCTTTGAGACAGGAGAGTATGCACTTA TTGCATGGGTTGGAGTACCAACAGCACCAGCTTGGTTACCGACAGATATGCTTATCATGGTACTGTTTGATGGTAGCCGTTTTTTGCAGCTTCTTTTGAT GATGATGTTTAGTAATTAA
AA sequence Show only first row Show all	>Lus10000828 pacid=23170691 polypeptide=Lus10000828 locus=Lus10000828.g ID=Lus10000828.BGIv1.0 annot-version=v1.0 MAAFSATLSRTTHVPPRIYPFPRSRSTIRLLPMIRAVNSAEPAKEKKAALQTKAAEQDPSTSSSTTPQLKPKKKPVYSMKKGQIVRVDKDKYLNSINYLS VGHPPYYKGLDYIYEDRGEVLDLRIFETGEYALIAWVGVPTAPAWLPTDMLIMVLFDGSRFLQLLLMMMFSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74880		NdhO, NDH-O	NADH dehydrogenase-like comple...		Lus10000828 [exp]	0	1
AT1G74880		NdhO, NDH-O	NADH dehydrogenase-like comple...		Lus10002095 [exp]	1.4	0.9622
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10030538 [exp]	1.7	0.9639
AT2G03420			unknown protein		Lus10036810 [exp]	4.0	0.9511
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10002906 [exp]	4.2	0.9516
AT2G39470		PnsL1, PPL2	Photosynthetic NDH subcomplex...		Lus10023436 [exp]	4.6	0.9591
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10012887 [exp]	5.2	0.9495
AT1G80380			P-loop containing nucleoside t...		Lus10018910 [exp]	5.7	0.9247
AT3G01440		PnsL3, PQL2, PQ...	PsbQ-like 2, Photosynthetic ND...		Lus10035839 [exp]	6.0	0.9523
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10022507 [exp]	6.5	0.9515
AT1G51110			Plastid-lipid associated prote...		Lus10012100 [exp]	6.6	0.9431

Compare expression of checked genes

Lus10000828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.