Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53570 511 / 1e-175 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G63700 366 / 3e-116 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT5G66850 291 / 2e-89 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT1G54960 256 / 3e-77 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT1G09000 254 / 4e-76 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT3G06030 244 / 2e-72 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT4G08500 230 / 2e-67 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT4G08470 202 / 2e-57 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT4G08480 203 / 2e-56 MEKK2, MAPKKK9 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) AT4G12020 204 / 6e-56 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002096 [exp] 869 / 0 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10032279 [exp] 370 / 1e-117 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10039250 [exp] 368 / 7e-117 AT1G63700 818 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10024645 [exp] 366 / 4e-116 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10027496 [exp] 365 / 1e-115 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10014976 [exp] 351 / 4e-111 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10038858 [exp] 322 / 2e-100 AT1G63700 668 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10021766 [exp] 276 / 1e-82 AT5G66850 452 / 7e-148 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10009339 [exp] 273 / 2e-82 AT5G66850 568 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G106800 [exp] 597 / 0 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.005G062500 [exp] 569 / 0 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.015G146700 [exp] 374 / 4e-119 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.012G143900 [exp] 369 / 4e-117 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.001G102900 [exp] 360 / 5e-114 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.003G129000 [exp] 360 / 1e-113 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.007G039800 [exp] 276 / 3e-84 AT5G66850 511 / 3e-173 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.005G135100 [exp] 273 / 7e-83 AT5G66850 589 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.014G035500 [exp] 266 / 1e-79 AT5G66850 453 / 4e-149 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.002G129100 [exp] 261 / 1e-77 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10000829 pacid=23170687 polypeptide=Lus10000829 locus=Lus10000829.g ID=Lus10000829.BGIv1.0 annot-version=v1.0 ATGGATTCATTCCCCTCCTCTGGATCTCCCGCCTTCTCTGGGTTCGATTCCGACTTTGCTGCGGAGAGGAAAGGTCATCCTCTCCCGCGTCCTCGCCCCT CCAGCAGTGATCGAGGCGGCGGCGGCGGCGGCGATCAGGGGTCCGGTTCTGCTTCCGGTTCTGTATCTAGTGTCAGCTCTACTGGCTCTGATGAGCAGCA CCAGATTGTGAATATTGATCAGCAGGCTAGCTTCTTTGCTTGTGGTTATAGGTCACCTGGCAATCCTGGAGGACGTGCTGAAGCAAAGGCTTACATGGGT GGTTCTAGGAGCCCCGGTCCAGGTTCGAGGAGCCCCTGTCCAGGTTCGAGGAGCCCTGGTCCGAGATCAAGGAGTCCTGTTCCTGGTTCGAGAGGCGCAA GCAGGCCTACCTCGCCACTTCATCCTCGTTTGAGTGGTCTGAATCTTGATTCCCCAACTGGGAGAGGGTCTGAAGATGGGAAAAGCCAATGCCACCCTTT GCCTCTTCCACCAACTTCCCCTACTAGTCCATCTTCTTCCGTGACAAGCACTAGAAGTCCCGGAGCAACTGAGGGTGCAGCTGCAACTCTCTCGAGATGG AAGAAGGGAAAGCTTCTTGGAAGGGGAACTTTCGGTCAAGTTTACCTCGGATTTAATAGTGTGAATGGGCAGATGTGTGCAATCAAAGAAGTTAGGGTTG TCTCTGATGATCAGACGTCGAAAGAATGTCTCAAGCAACTGAACCAGAGTGAGGAGACCCTTTCCGTTTATCTTGAGTTCGTCTCGGGTGGTTCCATTCA CAAATTGCTGCAAGAATATGGTGCCTTTAAGGAGCCTGTCATCCAAAATTATACCAGGCAGATTCTGTCCGGACTAGCCTACTTACATGGAAGAAATACA GTTCACAGGGATATCAAAGGAGCCAACATATTAGTTGATCCTAATGGTGAAATCAAATTGGCCGACTTTGGCATGGCTAAACATATTACAGCTTGCTCTT CGATGCTTTCGTTCAAGGGAAGTCCTTACTGGATGGCACCTGAGGTTGTAATGAATACAAATGGATACAGCCTTGCAGTGGATATATGGAGTTTGGGATG TACGATTCTTGAAATGGCAGCTGGAAAACCTCCTTGGAGTCAGTATGAAGGGGTGGCTGCTATATTTAAAATTGGCAACAGCAAGGACATGCCTGAAATA CCATATTTCCTTTCTGACGAGGCTAAGAGTTTCATAAAGCTGTGCTTGCAGCGAGATCCATGTTTACGCCCTACAGCATCACAGTTGTTAGACCATCCTT TCCTCCGCGACCATGCAATGAGAGTTCCTAATAGCAATCCTTCTTCACCATACAACTTTGATGGAAGCCGCACCCCGCCTGCATTGGATCTTCAACCAAA CAGAAATGGCATTACCTCCCATGAGGCAGAGTATCCTATTAAGCATGTCATCACTAATGTCAGAGCCACAAGAACCTCAAGGGACGACATGAGGATGATA ACCTCTCTCCCTGTATCCCCTTGCTCAAGCCCGTTGCGCCAGAATGGACCGGCTCATAGAAGCTGTTTCCTGTCTCCTCCACATCTCTACCCTCTGATGG GCCAAAATGGTAGCTACAACAACGTATCTGACTTCTTCCTACAACCAGTGAGACAACCCCCTGCACTATCTCACAGCGACTTTGTCCTCGACTCCAACTC CCTGATGAACCAAATGACAGGCGCATCATCGCAACCAATAATAAGACGCAACTCATGA
AA sequence Show only first row Show all	>Lus10000829 pacid=23170687 polypeptide=Lus10000829 locus=Lus10000829.g ID=Lus10000829.BGIv1.0 annot-version=v1.0 MDSFPSSGSPAFSGFDSDFAAERKGHPLPRPRPSSSDRGGGGGGDQGSGSASGSVSSVSSTGSDEQHQIVNIDQQASFFACGYRSPGNPGGRAEAKAYMG GSRSPGPGSRSPCPGSRSPGPRSRSPVPGSRGASRPTSPLHPRLSGLNLDSPTGRGSEDGKSQCHPLPLPPTSPTSPSSSVTSTRSPGATEGAAATLSRW KKGKLLGRGTFGQVYLGFNSVNGQMCAIKEVRVVSDDQTSKECLKQLNQSEETLSVYLEFVSGGSIHKLLQEYGAFKEPVIQNYTRQILSGLAYLHGRNT VHRDIKGANILVDPNGEIKLADFGMAKHITACSSMLSFKGSPYWMAPEVVMNTNGYSLAVDIWSLGCTILEMAAGKPPWSQYEGVAAIFKIGNSKDMPEI PYFLSDEAKSFIKLCLQRDPCLRPTASQLLDHPFLRDHAMRVPNSNPSSPYNFDGSRTPPALDLQPNRNGITSHEAEYPIKHVITNVRATRTSRDDMRMI TSLPVSPCSSPLRQNGPAHRSCFLSPPHLYPLMGQNGSYNNVSDFFLQPVRQPPALSHSDFVLDSNSLMNQMTGASSQPIIRRNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53570		MAPKKK3, MAP3KA	MAP KINASE KINASE KINASE 3, mi...		Lus10000829 [exp]	0	1
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10002096 [exp]	1.0	0.8972
AT5G56610			Phosphotyrosine protein phosph...		Lus10012928 [exp]	2.0	0.8503
					Lus10040816 [exp]	3.9	0.8389
AT2G17480		ATMLO8, MLO8	MILDEW RESISTANCE LOCUS O 8, S...		Lus10022096 [exp]	4.7	0.7738
AT5G42000			ORMDL family protein (.1.2)		Lus10017314 [exp]	4.9	0.7826
AT1G59870		ATABCG36, ABCG3...	PENETRATION 3, ARABIDOPSIS PLE...		Lus10037562 [exp]	5.5	0.7416
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10004268 [exp]	8.4	0.7828
AT2G40410			Staphylococcal nuclease homolo...		Lus10040967 [exp]	9.2	0.8009
AT2G17760			Eukaryotic aspartyl protease f...		Lus10041865 [exp]	9.5	0.7743
AT5G46240		KAT1	potassium channel in Arabidops...		Lus10042831 [exp]	11.8	0.7364

Compare expression of checked genes

Lus10000829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.