Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13680 556 / 0 GLS2, ATGSL02, CALS5 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) AT5G13000 481 / 3e-155 CALS3, ATGSL12 callose synthase 3, glucan synthase-like 12 (.1.2) AT1G06490 476 / 1e-153 CalS7, ATGSL7, ATGSL07 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) AT2G31960 451 / 1e-144 ATGSL3, ATGSL03 glucan synthase-like 3 (.1.2) AT1G05570 451 / 1e-144 ATGSL6, ATGSL06, GSL6, CALS1 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) AT3G59100 437 / 1e-139 ATGSL11 glucan synthase-like 11 (.1) AT5G36870 383 / 3e-120 ATGSL9, ATGSL09 glucan synthase-like 9 (.1) AT3G14570 379 / 6e-119 ATGSL4, ATGSL04 glucan synthase-like 4 (.1.2) AT3G07160 376 / 6e-118 CALS9, ATGSL10 glucan synthase-like 10 (.1) AT4G04970 349 / 1e-108 ATGSL01, ATGSL1 GLUCAN SYNTHASE LIKE-1, GLUCAN SYNTHASE LIKE 1, glucan synthase-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002096 [exp] 689 / 0 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10033483 [exp] 653 / 0 AT2G13680 1447 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10020893 [exp] 652 / 0 AT2G13680 3037 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10013744 [exp] 477 / 3e-154 AT1G05570 2981 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10039199 [exp] 477 / 1e-153 AT5G13000 3524 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Lus10003920 [exp] 468 / 1e-150 AT1G05570 3231 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10007327 [exp] 448 / 6e-149 AT1G06490 1448 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Lus10037469 [exp] 459 / 2e-147 AT1G05570 3143 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10001056 [exp] 456 / 6e-147 AT1G06490 1596 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G058300 [exp] 575 / 0 AT2G13680 3190 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Potri.001G012200 [exp] 481 / 3e-155 AT5G13000 3492 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.003G214200 [exp] 480 / 7e-155 AT5G13000 3363 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.002G058700 [exp] 457 / 1e-146 AT1G06490 2961 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.005G203500 [exp] 453 / 3e-145 AT1G06490 2914 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.001G230000 [exp] 451 / 1e-144 AT5G13000 3157 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.011G095100 [exp] 382 / 1e-119 AT3G14570 2863 / 0.0 glucan synthase-like 4 (.1.2) Potri.015G089300 [exp] 381 / 2e-119 AT2G36850 3066 / 0.0 CHORUS, glucan synthase-like 8 (.1) Potri.001G011900 [exp] 360 / 5e-112 AT3G07160 2981 / 0.0 glucan synthase-like 10 (.1) Potri.013G131300 [exp] 347 / 1e-107 AT4G03550 2752 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [flax] [poplar] GT-C PF02364 [flax] [poplar] Glucan_synthase 1,3-beta-glucan synthase component
Representative CDS sequence Show only first row Show all	>Lus10000830 pacid=23170685 polypeptide=Lus10000830 locus=Lus10000830.g ID=Lus10000830.BGIv1.0 annot-version=v1.0 ATGGCTTCACAGTCCGTCGTTCAGCTAGGAATCCTCACAGCGTTGCCCATGGTAATGGAGATGGGGTTAGAGAGAGGTTTCAGAACAGCACTAGGTGACA TAATAATCATGCAGCTACAGCTCGCAGCAGTCTTCTTCACCTTCTCTCTAGGAACTAGGGTCCACTACTTTGGTCGAACAGTCCTGCACGGTGGTGCAAA ATATAGAGCCATAGGTCGTGGCTTTGTCGTTCGCCACGAGAAGTTTGCAGAAAACTACAGGATGTACTCGAGAAGCCACTTCGTCAAAGCCTTGGAGCTC ATGTTACTGCTGCCATGTTATCAGATATACGGGGAAGCAGTGAACGGCCAAGAAGCTTACATGCTCCTCACAGCTTCCATGTGGTTCTTACTAAGCTCCT GGCTGTCTGCACCCTTTTTGTTCAACCCGTCAGGATTCGAGTGGCAGAAGATCGTGGATGATTGGGATGACTGGACCAAGTGGATCAACAGCAGAGGAGG AATTGGTGTGCCGGCGAATATGAGCTGGGAGTCATGGTGGGAAGAAGAACAGGAGCACCTCCAGCACACAGGAATCTCAGGACAGATATGTGAAGTAATC CTCGCTCTCCGTTTCTTCATCTATCAGTATGGCATTGTTTACCAGCTCAAAGTTACGAAAGCCACATCTGCTGGACGAGAGCACAGTATATCTGTTTATA GGCTATCATGGCTGGTCATTGCTGCTCTGATGCTAATCCTGAAGACTGTATCAACGGGTAGAAAGAAATTCAGTGCAGACTTCCAGTTAATGTTCAGACT TCTAAAGTTCATCCTTTTCATCGGTTTCGTGGTCACCCTCATAATCTTGTTTACTACACTCCATCTCACAGTGGGAGATGTGTTCCAGAGCTTGTTAGCC TTCCTCCAAACCGGATGGGCTATTCTACAGATATCGCAAGCTTGCAAGCCGATAGTGAAAGGGAAGATGTGGGGATCAGTCAAGGCATTGGGAAGAGGGT ACGAGTACATGATGGGGTTAATACTGTTTCTCCCGATAGCAGTACTTGCATGGTTCCCATTTGTATCGGAGTTCCAGAACAGACTTCTAGTCAACCAAGC CTTCAGCAGAGGCCTTCAGATCGAACGTATCCTTGCTGGTGGAAAGAAGCACAAGTAA
AA sequence Show only first row Show all	>Lus10000830 pacid=23170685 polypeptide=Lus10000830 locus=Lus10000830.g ID=Lus10000830.BGIv1.0 annot-version=v1.0 MASQSVVQLGILTALPMVMEMGLERGFRTALGDIIIMQLQLAAVFFTFSLGTRVHYFGRTVLHGGAKYRAIGRGFVVRHEKFAENYRMYSRSHFVKALEL MLLLPCYQIYGEAVNGQEAYMLLTASMWFLLSSWLSAPFLFNPSGFEWQKIVDDWDDWTKWINSRGGIGVPANMSWESWWEEEQEHLQHTGISGQICEVI LALRFFIYQYGIVYQLKVTKATSAGREHSISVYRLSWLVIAALMLILKTVSTGRKKFSADFQLMFRLLKFILFIGFVVTLIILFTTLHLTVGDVFQSLLA FLQTGWAILQISQACKPIVKGKMWGSVKALGRGYEYMMGLILFLPIAVLAWFPFVSEFQNRLLVNQAFSRGLQIERILAGGKKHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10000830 [exp]	0	1
AT5G40600		EMB1875	unknown protein		Lus10003647 [exp]	2.2	0.8719
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10029336 [exp]	5.0	0.8259
AT2G02000		GAD3	glutamate decarboxylase 3 (.1)		Lus10009116 [exp]	7.6	0.8456
AT4G03090			sequence-specific DNA binding;...		Lus10024746 [exp]	7.7	0.8243
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10037615 [exp]	9.8	0.8260
AT3G56320			PAP/OAS1 substrate-binding dom...		Lus10034219 [exp]	13.1	0.8111
					Lus10043057 [exp]	13.7	0.8174
AT2G24450		FLA3	FASCICLIN-like arabinogalactan...		Lus10020158 [exp]	17.1	0.7464
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10039959 [exp]	19.2	0.8414
					Lus10019128 [exp]	21.2	0.7571

Compare expression of checked genes

Lus10000830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.