Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13680 286 / 8e-89 GLS2, ATGSL02, CALS5 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) AT5G13000 181 / 3e-52 CALS3, ATGSL12 callose synthase 3, glucan synthase-like 12 (.1.2) AT2G31960 180 / 7e-52 ATGSL3, ATGSL03 glucan synthase-like 3 (.1.2) AT1G05570 178 / 2e-51 ATGSL6, ATGSL06, GSL6, CALS1 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) AT3G14570 118 / 2e-30 ATGSL4, ATGSL04 glucan synthase-like 4 (.1.2) AT5G36870 117 / 7e-30 ATGSL9, ATGSL09 glucan synthase-like 9 (.1) AT3G59100 108 / 4e-27 ATGSL11 glucan synthase-like 11 (.1) AT1G06490 105 / 7e-26 CalS7, ATGSL7, ATGSL07 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) AT4G03550 81 / 2e-17 ATGSL5, PMR4, GSL5, ATGSL05 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) AT3G07160 77 / 3e-16 CALS9, ATGSL10 glucan synthase-like 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002097 [exp] 342 / 5e-110 AT2G13680 1916 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10033482 [exp] 328 / 2e-106 AT2G13680 1556 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10020893 [exp] 239 / 1e-72 AT2G13680 3037 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10039199 [exp] 176 / 3e-50 AT5G13000 3524 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Lus10013744 [exp] 176 / 3e-50 AT1G05570 2981 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10003920 [exp] 169 / 6e-48 AT1G05570 3231 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10037469 [exp] 168 / 7e-48 AT1G05570 3143 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10042478 [exp] 124 / 3e-32 AT3G14570 2889 / 0.0 glucan synthase-like 4 (.1.2) Lus10020751 [exp] 111 / 5e-28 AT3G59100 934 / 0.0 glucan synthase-like 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G058300 [exp] 295 / 3e-92 AT2G13680 3190 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Potri.001G012200 [exp] 186 / 3e-54 AT5G13000 3492 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.003G214200 [exp] 178 / 3e-51 AT5G13000 3363 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.001G230000 [exp] 168 / 9e-48 AT5G13000 3157 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.005G203500 [exp] 110 / 1e-27 AT1G06490 2914 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.002G058700 [exp] 103 / 2e-25 AT1G06490 2961 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.011G095100 [exp] 93 / 1e-21 AT3G14570 2863 / 0.0 glucan synthase-like 4 (.1.2) Potri.013G131300 [exp] 86 / 3e-19 AT4G03550 2752 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) Potri.001G011900 [exp] 72 / 2e-14 AT3G07160 2981 / 0.0 glucan synthase-like 10 (.1) Potri.011G052400 [exp] 72 / 2e-14 AT4G04970 2583 / 0.0 GLUCAN SYNTHASE LIKE-1, GLUCAN SYNTHASE LIKE 1, glucan synthase-like 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000832 pacid=23170690 polypeptide=Lus10000832 locus=Lus10000832.g ID=Lus10000832.BGIv1.0 annot-version=v1.0 ATGATGGTGGATGCGGAACTTCAACTCCGAACAGAATTTCACCAATTTAAGGCCCATGATTCTTGGGCACGAGTCAGCTTCATGGCCTGCCAAGAAAATG CTTCCAGTATCGCATCCCGGGTTAAGAAGACGGATGCGCGCGAAATCCAGAGCTTCTATTACCAGTACTATAAACAATATGTCGAAGCACTCGAGCAGGG CGAGCAGGCAGATAGAGCTCAACTTGGCAAGGTCTATGAGACAGCAGGAGTACTTTATGAAGTACTTTGTGCCGTTAATAAGGCTGAGAAAGTTGAAGAG GTTGCTCCTGAGATTATTGCTGCAGCACGAGACATCCAAGAGAAGAAGGAAATCTATGCTCCATACAACATTCTTCCCTTGGATTCTGCCGGGGCCTCAC AGTCAATCATGCAACTCGAGGAGGTCAAGGCTGCTGTTGCAGCACTATGGAACACCCGAGGCTTGTCTTGGCCTTCATCTTTTGAGCAGCACAGGCAGAA AGCTGGAGATCTGGACCTTCTTGATTGGCTAAGGGCCATGTTTGGCTTCCAGAGAGACAGTGTTCGGAACCAAAGGGAGCATTTGATATTGCTGCTTGCC AACAACCATATAAGGCTCAATCCCAAGCCTGAACCTCTTAACAAGGCACGTGCTGGTCTGCGTGCTTGA
AA sequence Show only first row Show all	>Lus10000832 pacid=23170690 polypeptide=Lus10000832 locus=Lus10000832.g ID=Lus10000832.BGIv1.0 annot-version=v1.0 MMVDAELQLRTEFHQFKAHDSWARVSFMACQENASSIASRVKKTDAREIQSFYYQYYKQYVEALEQGEQADRAQLGKVYETAGVLYEVLCAVNKAEKVEE VAPEIIAAARDIQEKKEIYAPYNILPLDSAGASQSIMQLEEVKAAVAALWNTRGLSWPSSFEQHRQKAGDLDLLDWLRAMFGFQRDSVRNQREHLILLLA NNHIRLNPKPEPLNKARAGLRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10000832 [exp]	0	1
AT3G43610			Spc97 / Spc98 family of spindl...		Lus10003354 [exp]	2.0	0.9428
AT4G03090			sequence-specific DNA binding;...		Lus10006938 [exp]	3.9	0.9428
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10005726 [exp]	11.4	0.9373
AT3G55160			unknown protein		Lus10007253 [exp]	15.0	0.9348
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10002097 [exp]	16.2	0.9112
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10007174 [exp]	18.0	0.9319
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016882 [exp]	18.2	0.9290
AT5G47690			binding (.1.2.3)		Lus10038777 [exp]	19.4	0.9247
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10004767 [exp]	19.8	0.9278
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10022115 [exp]	22.6	0.9161

Compare expression of checked genes

Lus10000832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.