Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64070 734 / 0 PI-4KBETA1, PI4KBETA1 phosphatidylinositol 4-OH kinase beta1 (.1) AT5G49970 713 / 0 PDX3, ATPPOX HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.1), pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.2) AT5G09350 701 / 0 PI-4KBETA2, PI4KBETA2 phosphatidylinositol 4-OH kinase beta2 (.1) AT1G49340 186 / 8e-48 ATPI4K ALPHA, ATPI4KALPHA Phosphatidylinositol 3- and 4-kinase family protein (.1.2) AT1G51040 171 / 3e-45 Protein kinase superfamily protein (.1) AT1G60490 107 / 1e-23 PI3K, ATVPS34 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) AT1G50030 60 / 8e-09 TOR target of rapamycin (.1.2) AT3G48190 55 / 3e-07 PIG1, ATATM, ATM pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) AT5G40820 45 / 0.0003 ATATR, ATRAD3, ATR ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, Ataxia telangiectasia-mutated and RAD3-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002098 [exp] 1210 / 0 AT5G49970 731 / 0.0 HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.1), pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.2) Lus10000272 [exp] 355 / 9e-110 AT5G64070 764 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Lus10040481 [exp] 177 / 5e-45 AT1G49340 1556 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Lus10011285 [exp] 168 / 4e-42 AT1G49340 3010 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Lus10030885 [exp] 105 / 6e-23 AT1G60490 1397 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10030605 [exp] 105 / 1e-22 AT1G60490 1325 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10011315 [exp] 82 / 8e-17 AT1G49340 307 / 9e-96 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Lus10037246 [exp] 57 / 9e-08 AT1G50030 4101 / 0.0 target of rapamycin (.1.2) Lus10035661 [exp] 57 / 1e-07 AT1G50030 2590 / 0.0 target of rapamycin (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G109000 [exp] 777 / 0 AT5G64070 1412 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Potri.005G059000 [exp] 776 / 0 AT5G64070 1497 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Potri.002G102600 [exp] 743 / 0 AT5G49970 761 / 0.0 HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.1), pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.2) Potri.009G113700 [exp] 181 / 2e-46 AT1G49340 3062 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Potri.004G152400 [exp] 179 / 1e-45 AT1G49340 2964 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Potri.005G159500 [exp] 133 / 1e-35 AT5G49970 145 / 2e-41 HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.1), pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.2) Potri.012G075100 [exp] 114 / 1e-25 AT1G60490 1388 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Potri.001G289200 [exp] 66 / 2e-10 AT1G50030 4080 / 0.0 target of rapamycin (.1.2) Potri.009G084500 [exp] 64 / 5e-10 AT1G50030 4038 / 0.0 target of rapamycin (.1.2) Potri.015G076650 [exp] 54 / 5e-07 AT3G48190 3584 / 0.0 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10590 [flax] [poplar] PNP_phzG_C Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CL0336 [flax] [poplar] FMN-binding PF01243 [flax] [poplar] Putative_PNPOx Pyridoxamine 5'-phosphate oxidase CL0063 [flax] [poplar] NADP_Rossmann PF03853 [flax] [poplar] YjeF_N YjeF-related protein N-terminus CL0016 [flax] [poplar] PKinase PF00454 [flax] [poplar] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase
Representative CDS sequence Show only first row Show all	>Lus10000833 pacid=23170689 polypeptide=Lus10000833 locus=Lus10000833.g ID=Lus10000833.BGIv1.0 annot-version=v1.0 ATGTACCGTGTGGTTCATATACCTGAAGACGAGGCTGTTCTACTGAACTCCAGGGAGAAGGCACCTTATCTGATCTGCGTGGAAGTTCTGAAAAGTGAAA TGCCAAGCAATTCCAAAGATTCCTCTGGCTCTCAAAAGCTTTCTAGAGGAGGAATTCCTCTTGAAAATGGAGATGCATTGTGGAAAAAGCCCCCTCCATG GGCATATCCGTTATGGACTACACAGGAAGCATACCGGAACAGTAGTGATAGAATGTCAAGATCCACAGCTGAAGCCATTGATCAGGCAATGTCCCATTCT TCGGAAGCAAAGTTAAAGGTTGTCACTGTGAGTCTTTCTGTGGAGAGGCGGACAATAGACTCAAGACTAAAAAGTGAAGCACCTGATTTACACTCTGGCA TCCATCGCAGTAATTTGCGGAAAAAGGCAGCAGATGGCTGTGATTTTGAATGGGTAAGGGTTGTGCTGACATCAGATATTGGAGCTAGAAGGGAGCATCG TCGTGTTCCAAGCACCATTGCAATAGAAGAAGTAAAGGCTGCAGCAGCCAAGGGTGAAGCACCTCCTGGATTTCGTCTGAAAGGAGCCGGACAAGATTCA TCAGATGCCCAACCAAGGGTAAATGGTGGCACTCCTGGAGCCACTGATCCCTTATCAGGCGAACTTTGGGAGGTGAAGAAAGATAGAATACGCAAAGCTT CAGCTCATGGGAAGTTACCCGGTTGGAACTTGAGCTCTGTAATTGTAAAGAGTGGGGATGATTGTAGGCAAGAGCATCTCGCTGTGCAACTTATTTCTCA TTTCTATGATATATTCCAAGAAGCTGGACTTCCTCTCTGGCTGCGTCCTTATGAAGTTCTGGTGACCTCTTCGTACACAGCTCTTATTGAAACAGTCCCA GATACGGCTTCTATTCATTCCATCAAGACTAGATATGCTAATGTAACAAGTTTGCGTGACTTCTTTGTTGCAAAGTACAAAGAGAATTCCTCAAGTTTTA AGCTTGCCCAGAGGAACTTTGTTGAAAGTATGGCTGGATACTCCCTGGTGTGCTACCTTCTACAGGTGAAGGATAGACATAATGGGAACCTTTTATTGGA TGAAGAAGGTCATATTATACATATTGACTTTGGATTCATGCTCTCCAATTCACCTGGCGGAGTAAACTTCGAGAGTGCACCTTTCAAGTTAACACGGGAA CTTCTTGAGGTCATGGACTCTGATGCAGAGGGAATTCCAAGCGAATTTTTTGACTACTTCAAGGTTTTGTGTATTCAAGGATTCTTAACTTGTCGTAAGC ATGCGGAGCGGATAATTCTTCTTGTCGAGATGTTGCAGGATTCCGGGTTTCCTTGCTTTAAAGGAGGTTCGAGGACTATACAAAACCTAAGAAAACGGTT TGATCTAAGTTTGACAGAAGAGGATTTGTCTCGTCCGGTTTCGAGTTCGTCTGGTTTGATTTGCTCGTTTTTGGCTCGAGGGATCGCGACCATGTCTAAT TCGGATACCGTCACGTACCTCACCCAGCGAGAAGCTGCCGAAATGGACGAGATTCTCATGGGCCCTCTGGGATTCAGCGTCGATCAGTTGATGGAATTGG CGGGTTTAAGCGTTGCTGCTGCCATATCTGAGGTGTATAAACCAACTGAGTACAATCGCGTTCTCGTCATTTGCGGTCCTGGGAATAACGGTGGGGATGG ATTAGTTGCTGCTCGTCATCTGTTTCACTTTGGATACAGACCTTTCATTTGTTACCCGAAGAGGACTCCTAAACCTCTTTATTATGGTCTCGTTACTCAG CTGGAATCTCTTTCTATTCCTTTCGTGGCTGTCGAAGATTTGCCATCTGACTTGTCTAAGGAATTCGATATTATCATAGATGCGATGTTTGGGTTCTCAT TCCATGGTGACCCAAGACCACCTTTTGATGATCTCATCAAAAAATTGGCGGACTTATATGATCCTAATGCTGCTGGCCAAAGGACACCTTCCATTATTTC TGTGGATATCCCATCTGGGTGGCATGTTGAGGATGGAGATGTTAATGGTGGAGGCATCAAACCCGACATGTTGGTTTCTTTAACTGCTCCAAAGTTAGGG GCGAAGAAGTTTTTAGGGATGTACCACTTTATAGGCGGTAGATTTGTCCCGCCAGCTGTTCGAGATAAATATAAGCTTTGTCTTCCACCATACCCCGGAA ATTCCATGTGTGTTCGAATCGGAAGTCCTGCTCAAGTTGATATATCAGCACTCAGGGAGAACTATATCTCTCCAGAGTTCCTTGAGGAGCTGGTGGCAGG AGATCCATTTGTTCAGTTCCGCAGATGGTTTGATGAGGCTGTAGAGGCTGGATTGAAGGAGCCGAATGCTATGGGTTTGTCCACAGTTGGGAAGGATGGG AAGCCCTCCTCAAGGATGGTTCTGCTAAAAGGGTTTGATCACGATGGGTTTGTTTGGTACACCAATTATGAGAGTAAAAAAGCACATGATCTATCTGAAA ATCCTCGAGCATCACTCCTTTTCTATTGGCCCGGGCTTAATCGGCAGGTAAGGGTGGAGGGATCTGTGCAGAAGGTTTCTGAAGAAGAATCTGAACAGTA CTACCACAGCCGTCCTCGAGGAAGTCAAATGGGAGCAATAGTTAGCAAACAGAGTTGTGTAATTCCTAGAAGAGAGGTTTTATACCAGGAATACAAAGAA CTAGTGGAGAAGTATTCTGATGGGAGTGTGATTCCAAAACCCATAAACTGGGGAGGATACAGGCTTAAACCAGAGCTTTTTGAGTTTTGGCAGGGGCAGC AATCCCGCTTACATGACAGATTGCAGTATACTCCTGAAGAGACTCATGGGAAACGAGTTTGGAAAATTGTCCGATTGGCTCCATGA
AA sequence Show only first row Show all	>Lus10000833 pacid=23170689 polypeptide=Lus10000833 locus=Lus10000833.g ID=Lus10000833.BGIv1.0 annot-version=v1.0 MYRVVHIPEDEAVLLNSREKAPYLICVEVLKSEMPSNSKDSSGSQKLSRGGIPLENGDALWKKPPPWAYPLWTTQEAYRNSSDRMSRSTAEAIDQAMSHS SEAKLKVVTVSLSVERRTIDSRLKSEAPDLHSGIHRSNLRKKAADGCDFEWVRVVLTSDIGARREHRRVPSTIAIEEVKAAAAKGEAPPGFRLKGAGQDS SDAQPRVNGGTPGATDPLSGELWEVKKDRIRKASAHGKLPGWNLSSVIVKSGDDCRQEHLAVQLISHFYDIFQEAGLPLWLRPYEVLVTSSYTALIETVP DTASIHSIKTRYANVTSLRDFFVAKYKENSSSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSPGGVNFESAPFKLTRE LLEVMDSDAEGIPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFKGGSRTIQNLRKRFDLSLTEEDLSRPVSSSSGLICSFLARGIATMSN SDTVTYLTQREAAEMDEILMGPLGFSVDQLMELAGLSVAAAISEVYKPTEYNRVLVICGPGNNGGDGLVAARHLFHFGYRPFICYPKRTPKPLYYGLVTQ LESLSIPFVAVEDLPSDLSKEFDIIIDAMFGFSFHGDPRPPFDDLIKKLADLYDPNAAGQRTPSIISVDIPSGWHVEDGDVNGGGIKPDMLVSLTAPKLG AKKFLGMYHFIGGRFVPPAVRDKYKLCLPPYPGNSMCVRIGSPAQVDISALRENYISPEFLEELVAGDPFVQFRRWFDEAVEAGLKEPNAMGLSTVGKDG KPSSRMVLLKGFDHDGFVWYTNYESKKAHDLSENPRASLLFYWPGLNRQVRVEGSVQKVSEEESEQYYHSRPRGSQMGAIVSKQSCVIPRREVLYQEYKE LVEKYSDGSVIPKPINWGGYRLKPELFEFWQGQQSRLHDRLQYTPEETHGKRVWKIVRLAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Lus10000833 [exp]	0	1
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Lus10035023 [exp]	3.2	0.9353
AT1G60995			unknown protein		Lus10014638 [exp]	7.4	0.9160
AT5G28850			Calcium-binding EF-hand family...		Lus10021174 [exp]	7.7	0.9178
AT3G20250		APUM5	pumilio 5 (.1)		Lus10033353 [exp]	11.2	0.9195
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10001973 [exp]	12.0	0.9138
AT4G23050			PAS domain-containing protein ...		Lus10017844 [exp]	15.3	0.9029
AT4G19110			Protein kinase superfamily pro...		Lus10008303 [exp]	17.2	0.9073
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10018289 [exp]	18.0	0.8999
AT5G01010			unknown protein		Lus10042743 [exp]	19.0	0.9015
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10012041 [exp]	19.6	0.8985

Compare expression of checked genes

Lus10000833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.