Plant FIBer expression Database

Lus10000834 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009329
[exp]
239 / 3e-81 AT5G66630 42 / 2e-04 DA1-related protein 5 (.1)
Lus10009328
[exp]
117 / 5e-33 AT3G50470 79 / 4e-18 INTRACELLULAR MILDEW A 10, homolog of RPW8 3 (.1)
Lus10000835
[exp]
92 / 2e-23 AT3G50470 51 / 5e-08 INTRACELLULAR MILDEW A 10, homolog of RPW8 3 (.1)
Lus10000836
[exp]
86 / 5e-21 AT3G50470 52 / 2e-08 INTRACELLULAR MILDEW A 10, homolog of RPW8 3 (.1)
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05659 RPW8 Arabidopsis broad-spectrum mildew resistance protein RPW8
Representative CDS sequence
>Lus10000834 pacid=23148152 polypeptide=Lus10000834 locus=Lus10000834.g ID=Lus10000834.BGIv1.0 annot-version=v1.0
ATGGCGACAGCCGCTGAACTCCTCGGCGGCGCTACGTTGGGGGTATTCTTCCAACAGTTCTACGACAAGATCGAAAGCATCATCGTTCAGTACGCCACCA
TAAGAAAGAGGGTAGATTCATTGGCTCGGATATTGCGGAAGCTGAGCATCAGGTACAAGGACTTCCATGAATGCTACCCGGCCTGTAATCTGAAACCAGA
GACCCTCGGACTCCAAGAGCTGTTCGAGAAAGCCGAAGCGCTCGTCAAGGACTGCGCGAGGCTTCGCTGGTGGAAGCTCAGGATTTGCTTAAGAATTGAG
CATTTGATGGTTTGGAAGAACCGGAAGTTGGACCATATGTACGTGAAAAAGGCCGCCCCTTTTACGCCGCCCTATGACCAAAGTTACGGCGGCGCCGATA
ACGGAAAAACGGCGTTTCTTGGAAATCATGATGAACGCCCGGGCTTGCGGAGCGAGTTTTATTACGAGAGGAGGAAGAAGCATAGAGTCAAATTAAGCTT
CTGCTTCAGCTACTGTTATGATAACGGTCATGACGATTAA
AA sequence
>Lus10000834 pacid=23148152 polypeptide=Lus10000834 locus=Lus10000834.g ID=Lus10000834.BGIv1.0 annot-version=v1.0
MATAAELLGGATLGVFFQQFYDKIESIIVQYATIRKRVDSLARILRKLSIRYKDFHECYPACNLKPETLGLQELFEKAEALVKDCARLRWWKLRICLRIE
HLMVWKNRKLDHMYVKKAAPFTPPYDQSYGGADNGKTAFLGNHDERPGLRSEFYYERRKKHRVKLSFCFSYCYDNGHDD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10000834
[exp]
0 1
Lus10038412
[exp]
1.4 0.8710
AT2G17480 ATMLO8, MLO8 MILDEW RESISTANCE LOCUS O 8, S... Lus10019630
[exp]
3.2 0.7995
AT3G23110 EMB2800, AtRLP3... EMBRYO DEFECTIVE 2800, recepto... Lus10006824
[exp]
3.5 0.8702
AT1G47890 AtRLP7 receptor like protein 7 (.1) Lus10006825
[exp]
4.9 0.8669
AT1G61440 S-locus lectin protein kinase ... Lus10038413
[exp]
6.0 0.8088
AT1G74670 GASA6 GA-stimulated Arabidopsis 6, G... Lus10002059
[exp]
7.4 0.8230
AT1G11330 S-locus lectin protein kinase ... Lus10038411
[exp]
17.5 0.7474
AT2G15490 UGT73B4 UDP-glycosyltransferase 73B4 (... Lus10014084
[exp]
17.7 0.7446
AT3G51550 FER FERONIA, Malectin/receptor-lik... Lus10003942
[exp]
18.4 0.8449
AT5G53130 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNE... Lus10003396
[exp]
24.5 0.8174

Lus10000834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.