Plant FIBer expression Database

Lus10000835 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009328
[exp]
170 / 1e-53 AT3G50470 79 / 4e-18 INTRACELLULAR MILDEW A 10, homolog of RPW8 3 (.1)
Lus10009329
[exp]
123 / 1e-35 AT5G66630 42 / 2e-04 DA1-related protein 5 (.1)
Lus10000836
[exp]
114 / 5e-32 AT3G50470 52 / 2e-08 INTRACELLULAR MILDEW A 10, homolog of RPW8 3 (.1)
Lus10000834
[exp]
85 / 1e-20 ND /
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05659 RPW8 Arabidopsis broad-spectrum mildew resistance protein RPW8
Representative CDS sequence
>Lus10000835 pacid=23148140 polypeptide=Lus10000835 locus=Lus10000835.g ID=Lus10000835.BGIv1.0 annot-version=v1.0
ATGGATCTGACGGCCGCCGGTATCTTCGCCGGAGCTTTATTGGGGGTAGCCTTCCAAGAGGTGAGCGACGCGATCAAACGCATCAACGTTCGGAATTCCA
CCATCATGGTTCGGCTAGATTCATTGCGTCAGAAATTGGAGGTGTTGAGCCTCAGGTTCATAGCGTTCGACGAGCTCTGCCCGGACTTTGGCTTGCAAAC
GGAGACCCTCAGACTCCGAGAGCTGCTCGAGAAAGCCAAAGCGCTCGTCTTGGACTGCGAGGAGCTTCATTGGTGGCAACTTAGGTTGACACACAACTGC
TCGAAGCGGTTGGAGATCCTAAATGCTTCGTTTGCGGATTTCTTGACCGTGGATTTACAAGTTGCTCAGTTGCGCCACATCCTAGATAATGCGGCTAGGG
TTGTCGAGCTGAACCAAAAGTTGGACCGCATGTATGTGCAGGTCGCCTATGTTCCGCCTACGAATGGCGGAGGCGACAACTACGGAAATGTACGTCATAT
AAATGAACGCTCGGGCCTACGGACCGGGGTCCGGTATGAGAGGATGGGTTTCTGA
AA sequence
>Lus10000835 pacid=23148140 polypeptide=Lus10000835 locus=Lus10000835.g ID=Lus10000835.BGIv1.0 annot-version=v1.0
MDLTAAGIFAGALLGVAFQEVSDAIKRINVRNSTIMVRLDSLRQKLEVLSLRFIAFDELCPDFGLQTETLRLRELLEKAKALVLDCEELHWWQLRLTHNC
SKRLEILNASFADFLTVDLQVAQLRHILDNAARVVELNQKLDRMYVQVAYVPPTNGGGDNYGNVRHINERSGLRTGVRYERMGF

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G50470 MLA10, HR3 INTRACELLULAR MILDEW A 10, hom... Lus10000835
[exp]
0 1
AT3G11010 AtRLP34 receptor like protein 34 (.1) Lus10011039
[exp]
8.4 0.7603
AT3G50470 MLA10, HR3 INTRACELLULAR MILDEW A 10, hom... Lus10000836
[exp]
10.6 0.6976
AT3G57260 AtPR2, PR-2, PR... PATHOGENESIS-RELATED PROTEIN 2... Lus10027860
[exp]
13.4 0.7509
AT1G24140 Matrixin family protein (.1) Lus10005605
[exp]
19.7 0.7306
AT5G10770 Eukaryotic aspartyl protease f... Lus10020099
[exp]
20.9 0.7366
AT2G45560 CYP76C1 "cytochrome P450, family 76, s... Lus10027431
[exp]
21.5 0.7008
AT5G10760 Eukaryotic aspartyl protease f... Lus10026905
[exp]
28.1 0.7190
AT4G23180 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-li... Lus10018379
[exp]
29.1 0.7285
AT5G19580 glyoxal oxidase-related protei... Lus10012979
[exp]
30.0 0.7160
AT1G08140 ATCHX6a cation/H+ exchanger 6A, cation... Lus10009077
[exp]
31.4 0.6835

Lus10000835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.