Plant FIBer expression Database

Lus10000838 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G66930 361 / 2e-128 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019643
[exp]
393 / 2e-140 AT5G66930 317 / 4e-110 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G037800
[exp]
366 / 1e-130 AT5G66930 335 / 4e-118 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0651 Mad2 PF07855 ATG101 Autophagy-related protein 101
Representative CDS sequence
>Lus10000838 pacid=23148145 polypeptide=Lus10000838 locus=Lus10000838.g ID=Lus10000838.BGIv1.0 annot-version=v1.0
ATGAACTGCGAAGTCTGCCAACTCAAAGAGCTGGAAGTGGAGCACTTCGAGATACGGGAAGTTCTTCGCTGCATATTGCATACGGTTGTGTTCCATCGAG
CTTTGGGGCTGGTTCGGCCGAAAGTTATTGACTTGGAGCTCTTTGACATTACATATGTGCAATGTGGAGATGTTGAGCTAGAAAAGAAAATCGATGAGAA
GATTGAGCAGTTCATTAGTTGGGTGGAGAAACGTCCGAATAAGAAGAGCCAGGTTTGCATATCCTTCTATGAGGTGAAAAACAAGCACCCTTCATGGTTC
ACGAACAAGACGGAACGTCTTTACTGGGAACAATGGTATATCAACCTGAATGTGAGCCAACAACCAAAAGCGCACCTTGGAAAGTCGCATCATTCGAAGA
TAGTGGTGGATCCCGGAGAAACTTCGTTGGATGAGAGGAGTGCTCGCAGGGCAGCACTTGAATCGTCTCTTCGTGAGGTCTTGTTCCAAATAATAAAGTT
TGTGAACGAGAAGAAGGATCATGTCCCTCCTATATCTGATGGCGTCTCGTGCTTCCCTTACGAAATCACCATTCCCAGCTCGTCGGATTCTGCTTTTGGG
ATGGACATGATCAAGAGAATGCTCCACACCGGTCAGCCGAACATGCTCAGCTGA
AA sequence
>Lus10000838 pacid=23148145 polypeptide=Lus10000838 locus=Lus10000838.g ID=Lus10000838.BGIv1.0 annot-version=v1.0
MNCEVCQLKELEVEHFEIREVLRCILHTVVFHRALGLVRPKVIDLELFDITYVQCGDVELEKKIDEKIEQFISWVEKRPNKKSQVCISFYEVKNKHPSWF
TNKTERLYWEQWYINLNVSQQPKAHLGKSHHSKIVVDPGETSLDERSARRAALESSLREVLFQIIKFVNEKKDHVPPISDGVSCFPYEITIPSSSDSAFG
MDMIKRMLHTGQPNMLS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G66930 unknown protein Lus10000838
[exp]
0 1
AT1G17020 ATSRG1, SRG1 senescence-related gene 1 (.1) Lus10011980
[exp]
5.1 0.8592
AT4G15050 Protein of Unknown Function (D... Lus10002231
[exp]
6.6 0.7805
AT3G50845 Protein of unknown function (D... Lus10014311
[exp]
10.9 0.8566
AT3G07970 QRT2 QUARTET 2, Pectin lyase-like s... Lus10038344
[exp]
11.6 0.8468
Lus10028295
[exp]
12.8 0.8402
AT1G50660 unknown protein Lus10002072
[exp]
13.8 0.8075
Lus10001343
[exp]
18.3 0.7691
Lus10025503
[exp]
18.3 0.8047
Lus10015798
[exp]
21.0 0.7916
AT2G29490 GST19, ATGSTU1 GLUTATHIONE S-TRANSFERASE 19, ... Lus10007896
[exp]
22.1 0.7903

Lus10000838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.