Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64030 711 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29470 662 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G34300 646 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G51070 630 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G40280 442 / 6e-150 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G56080 442 / 1e-149 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19430 378 / 3e-123 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 354 / 1e-114 Putative methyltransferase family protein (.1) AT1G77260 353 / 1e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G39750 351 / 3e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019644 [exp] 916 / 0 AT5G64030 922 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10020894 [exp] 806 / 0 AT5G64030 1019 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033481 [exp] 726 / 0 AT5G64030 924 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042767 [exp] 683 / 0 AT1G29470 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10029736 [exp] 681 / 0 AT1G29470 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10018954 [exp] 673 / 0 AT1G29470 1047 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028650 [exp] 664 / 0 AT1G29470 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028354 [exp] 642 / 0 AT3G51070 1051 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041804 [exp] 633 / 0 AT3G51070 1034 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G065200 [exp] 751 / 0 AT5G64030 1078 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G104000 [exp] 751 / 0 AT5G64030 1022 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G184500 [exp] 686 / 0 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G075800 [exp] 685 / 0 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G118100 [exp] 653 / 0 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G017400 [exp] 637 / 0 AT3G51070 960 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G185000 [exp] 461 / 1e-156 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G260600 [exp] 375 / 7e-122 AT1G19430 953 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 352 / 3e-114 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 348 / 2e-112 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10000839 pacid=23148143 polypeptide=Lus10000839 locus=Lus10000839.g ID=Lus10000839.BGIv1.0 annot-version=v1.0 ATGAACGAAACCTCCACCGAGAACGGGTCGTGGTCAACGCAGGCAGCAGAATCGAAGAACGAGAAGGAAACTCGGCAAGATCAGGAACAGCAGCACATTG GTGTATTCCAGGACTGGAAGTTGTGCAATGTCACAGCTGGGCCGGATTTTATTCCGTGTCTCGACAATTGGAAAGCTATTCAGAGTCTTAGTTCTACTAA ACACTATGAACATCGAGAGCGGCATTGTCCAGAGGAGTCTCCAACTTGCCTTGTTCAGCTTCCAGGAGGCTATAAACTCCCGATTCAGTGGCCTTTCAGT AGGCAAAAGGCAAGTTTTTTACCTTTTCCACTATCTTCTTTGCTGTTGTTCTTATCAGACAATCATGTAAAAGAAAGGATCCACGTTTGGTTGCAGATTT GGTACTCTAACGTACCCCATACGAAACTCGTCCACTTCAAAATGCGTCAAAATTGGGTGAAAGTTGATGGTCATTACCTTACTTTCCCTGGTGGTGGAAC TCAGTTCAAGCATGGCGCTCTCCATTATATCGACTTCATAAACGAGAATGTACCTGGCATTGCATGGGGGAAACGAAGCCGTGTGGTATTGGATGTTGGA TGTGGTGTTGCTAGTTTCGGAGGTTTCCTCTTCGAAAGAGATGTCCTGACAATGTCGTTTGCCCCTAAAGATGAACATGAAGCCCAAGTCCAGTTTGCTC TCGAGAGAGGAATCCCTGCTATCTCTGCTGTTATGGGTACAAAGAGACTCCCTTTTCCAGCCATAGTCTTTGATGTTGTCCACTGTGCACGTTGTAGGGT GCCATGGCATATCGAAGGCGGGTACTTCGTATGGTCCGCTACTCCAGCTTACCGAAAGCATCCTGAAGATAAAGAAATATGGAGAAGTAAGAAACCAATG AACAACACATGCTATGAAAAAGACAAAAAATCAGAGCAAAAGCCTCCATTTTGTGAAGCATCAACTGATGATCCTAATGCAGCCTGGAATGTATCTCAGC AAACATGCATACATAAGGTCCCAGTAGATTCTTTGGAACGTGGGTATCGATGGCCTGAGCAATGGCCAGCTAGGCTGGAGAAAACCCCTTACTGGATGTT AGGTTCTGAAATGGGAGTTTATGGCAAACCTCAGCAAGAAGACTTTGCTGCAGATTATGAGCACTGGAAGAGAGTTGTGTCCAAGTCGTATCGTAATCGG ATTGGAATCAACTGGGCAGCTGTGAGGAATGCCATGGACATGCGAGCTATCTACGGAGGCCTCTTAGGGATATACCATGATTGGTGCCAATCATCTAGCA CATACCCTAGATCGTATGATCTTGTACATGCTGATCACCTTTTCTCAAACATCAGGCAAAAGTGCAGGATAGTTCCTCTGGTTGTGGAGGTAGATCGAAT CCTGAGACCGGAAGGGCAACTTATCGTTCGTGATAATGCGGAGACTGTAAGTGAGGTTGAGAGTCTCTTGAGATCAATGCAGTGGGAGATTCGTATGGCG TATAAGAAGGACGGTGAAGGGTTGTTGTCTGCCCGGAAGACTATGCGGCGGCCCAATGTATTCGAAACGCTAGATTACGGGATTGTGAAATGA
AA sequence Show only first row Show all	>Lus10000839 pacid=23148143 polypeptide=Lus10000839 locus=Lus10000839.g ID=Lus10000839.BGIv1.0 annot-version=v1.0 MNETSTENGSWSTQAAESKNEKETRQDQEQQHIGVFQDWKLCNVTAGPDFIPCLDNWKAIQSLSSTKHYEHRERHCPEESPTCLVQLPGGYKLPIQWPFS RQKASFLPFPLSSLLLFLSDNHVKERIHVWLQIWYSNVPHTKLVHFKMRQNWVKVDGHYLTFPGGGTQFKHGALHYIDFINENVPGIAWGKRSRVVLDVG CGVASFGGFLFERDVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTKRLPFPAIVFDVVHCARCRVPWHIEGGYFVWSATPAYRKHPEDKEIWRSKKPM NNTCYEKDKKSEQKPPFCEASTDDPNAAWNVSQQTCIHKVPVDSLERGYRWPEQWPARLEKTPYWMLGSEMGVYGKPQQEDFAADYEHWKRVVSKSYRNR IGINWAAVRNAMDMRAIYGGLLGIYHDWCQSSSTYPRSYDLVHADHLFSNIRQKCRIVPLVVEVDRILRPEGQLIVRDNAETVSEVESLLRSMQWEIRMA YKKDGEGLLSARKTMRRPNVFETLDYGIVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64030			S-adenosyl-L-methionine-depend...		Lus10000839 [exp]	0	1
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10037248 [exp]	2.0	0.9089
AT5G35390			Leucine-rich repeat protein ki...		Lus10017144 [exp]	6.6	0.7907
AT1G35710			Protein kinase family protein ...		Lus10002293 [exp]	8.3	0.7566
AT1G24420			HXXXD-type acyl-transferase fa...		Lus10033658 [exp]	8.3	0.8263
AT5G10530			Concanavalin A-like lectin pro...		Lus10042309 [exp]	8.8	0.8912
AT2G28720			Histone superfamily protein (....		Lus10025313 [exp]	9.9	0.8770
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10023990 [exp]	11.6	0.6588
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Lus10033613 [exp]	14.0	0.7810
AT4G23470			PLAC8 family protein (.1.2.3)		Lus10005117 [exp]	14.1	0.7810
AT3G03470		CYP89A9	"cytochrome P450, family 87, s...		Lus10020354 [exp]	14.8	0.5901

Compare expression of checked genes

Lus10000839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.