Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23570 129 / 2e-37 ATMES19 ARABIDOPSIS THALIANA METHYL ESTERASE 19, methyl esterase 19 (.1) AT3G50440 129 / 6e-37 ATMES10 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) AT2G23560 122 / 1e-34 ATMES7 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) AT2G23550 122 / 1e-34 ATMES6, ABE1 ALPHA/BETA FOLD HYDROLASE/ESTERASE 1, methyl esterase 6 (.1.2) AT2G23580 118 / 7e-33 ATMES4, ABE4 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) AT2G23610 116 / 2e-32 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) AT5G10300 115 / 8e-32 AtHNL, HNL, ATMES5 HYDROXYNITRILE LYASE, ARABIDOPSIS THALIANA METHYL ESTERASE 5, methyl esterase 5 (.1) AT4G37150 113 / 3e-31 ATMES9 ARABIDOPSIS THALIANA METHYL ESTERASE 9, methyl esterase 9 (.1) AT2G23620 113 / 3e-31 ATMES1 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) AT2G23600 108 / 2e-29 ATMES2, ACL, ATME8 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023326 [exp] 201 / 2e-65 AT3G50440 263 / 3e-88 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10015532 [exp] 140 / 2e-41 AT2G23600 240 / 2e-79 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10022467 [exp] 130 / 2e-37 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10012855 [exp] 121 / 9e-36 AT3G50440 108 / 2e-29 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10038592 [exp] 124 / 5e-35 AT2G23620 306 / 4e-105 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Lus10020004 [exp] 106 / 8e-30 AT2G23570 115 / 1e-32 ARABIDOPSIS THALIANA METHYL ESTERASE 19, methyl esterase 19 (.1) Lus10005400 [exp] 100 / 6e-26 AT2G23610 206 / 8e-66 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Lus10005402 [exp] 93 / 3e-23 AT2G23580 204 / 3e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) Lus10009203 [exp] 92 / 1e-22 AT2G23620 205 / 6e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G037700 [exp] 140 / 2e-41 AT2G23620 300 / 6e-103 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037300 [exp] 137 / 5e-40 AT2G23620 289 / 2e-98 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.009G107500 [exp] 127 / 3e-36 AT3G50440 240 / 1e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.009G107200 [exp] 127 / 4e-36 AT3G50440 244 / 4e-80 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.007G036700 [exp] 120 / 7e-34 AT2G23610 244 / 8e-81 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Potri.007G036800 [exp] 115 / 2e-31 AT2G23560 230 / 2e-74 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) Potri.005G133700 [exp] 91 / 2e-22 AT2G23620 277 / 6e-94 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133600 [exp] 91 / 2e-22 AT2G23620 274 / 8e-93 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133800 [exp] 91 / 2e-22 AT2G23620 270 / 7e-91 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037066 [exp] 87 / 7e-22 AT2G23620 159 / 6e-49 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000841 pacid=23148146 polypeptide=Lus10000841 locus=Lus10000841.g ID=Lus10000841.BGIv1.0 annot-version=v1.0 ATGGAGAAGTTCCCAAGTAAGGTGCTTGTTGCTGTTTTTGTTGCAGCATTCATGCCTAGCTTCACTTCCCCTCCTGCCGATGTTGTTCTCGAGTTGCGGA AAAAAATGCCAATGGAGTCATTAATGGACTCGAAGTTTGATTGGACCGATGAGGCTAACGATGGACGAAATTTGGTTATATTTGGACCTCATCATATGGA AACTAGTTTCTACCAAAAGTGTCCACCTCAGGATTTTGAACTGGCAATGTCTCTGGTTAGGGAATCTGGGCTGTTCCTGAAAGACCTGGCTCAGGAATCT TTTCTGACAAAGGATAGATTCGGGTCGGTGAAAAGGGTTTATATTATAGCTGAAGAGGATAAAATCCTGACGAGAGATTTACAGGAATGGTTCATTCAGA ATGGTCCAGTTCAGGAAGATGGAGTGAAGTTCATTTCAGGAGCTGATCATATGGTTATGCTCTCGAAACCTGACGAGCTCTGTTCCTCTCTCCTCGAAAT TTCAAATAATCGGTGTACATGCATATGA
AA sequence Show only first row Show all	>Lus10000841 pacid=23148146 polypeptide=Lus10000841 locus=Lus10000841.g ID=Lus10000841.BGIv1.0 annot-version=v1.0 MEKFPSKVLVAVFVAAFMPSFTSPPADVVLELRKKMPMESLMDSKFDWTDEANDGRNLVIFGPHHMETSFYQKCPPQDFELAMSLVRESGLFLKDLAQES FLTKDRFGSVKRVYIIAEEDKILTRDLQEWFIQNGPVQEDGVKFISGADHMVMLSKPDELCSSLLEISNNRCTCI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23570		ATMES19	ARABIDOPSIS THALIANA METHYL ES...		Lus10000841 [exp]	0	1
					Lus10003030 [exp]	2.0	0.8274
AT2G23560		ATMES7	ARABIDOPSIS THALIANA METHYL ES...		Lus10000840 [exp]	3.0	0.8214
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013333 [exp]	3.7	0.8414
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10000381 [exp]	13.0	0.7454
AT3G27220			Galactose oxidase/kelch repeat...		Lus10014602 [exp]	19.2	0.7736
AT5G61000		ATRPA70D	Replication factor-A protein 1...		Lus10003025 [exp]	23.5	0.7539
AT2G36780			UDP-Glycosyltransferase superf...		Lus10027739 [exp]	25.8	0.7811
AT3G13228			RING/U-box superfamily protein...		Lus10025671 [exp]	29.7	0.7162
					Lus10019691 [exp]	29.8	0.7785
					Lus10019690 [exp]	31.0	0.8028

Compare expression of checked genes

Lus10000841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.