Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57270 88 / 4e-20 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT3G07320 82 / 1e-17 O-Glycosyl hydrolases family 17 protein (.1) AT5G56590 79 / 1e-16 O-Glycosyl hydrolases family 17 protein (.1) AT4G29360 78 / 3e-16 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G01630 76 / 9e-16 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G16260 74 / 7e-15 Glycosyl hydrolase superfamily protein (.1) AT3G57260 72 / 2e-14 AtPR2, PR-2, PR2, BG2, BGL2 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) AT1G32860 72 / 2e-14 Glycosyl hydrolase superfamily protein (.1) AT4G34480 68 / 6e-13 O-Glycosyl hydrolases family 17 protein (.1) AT2G16230 68 / 6e-13 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000844 [exp] 294 / 2e-98 AT3G07320 135 / 5e-35 O-Glycosyl hydrolases family 17 protein (.1) Lus10014108 [exp] 82 / 2e-17 AT3G57270 366 / 3e-123 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014109 [exp] 79 / 1e-16 AT3G57270 361 / 1e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10019801 [exp] 77 / 4e-16 AT3G57270 367 / 6e-127 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10001660 [exp] 72 / 3e-14 AT1G32860 462 / 8e-163 Glycosyl hydrolase superfamily protein (.1) Lus10013465 [exp] 71 / 9e-14 AT2G01630 745 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10034987 [exp] 70 / 1e-13 AT5G56590 562 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10031037 [exp] 69 / 4e-13 AT3G57240 312 / 3e-105 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10039233 [exp] 68 / 7e-13 AT4G16260 258 / 5e-84 Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G068600 [exp] 84 / 2e-18 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.001G255100 [exp] 82 / 8e-18 AT4G16260 369 / 9e-128 Glycosyl hydrolase superfamily protein (.1) Potri.004G153800 [exp] 75 / 3e-15 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G086400 [exp] 75 / 4e-15 AT1G66250 741 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G048100 [exp] 74 / 4e-15 AT3G57270 382 / 6e-133 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.010G142800 [exp] 73 / 1e-14 AT4G16260 433 / 2e-152 Glycosyl hydrolase superfamily protein (.1) Potri.006G046100 [exp] 72 / 2e-14 AT3G57270 370 / 4e-128 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057400 [exp] 71 / 4e-14 AT3G57270 416 / 4e-146 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.010G143166 [exp] 69 / 3e-13 AT4G16260 432 / 5e-153 Glycosyl hydrolase superfamily protein (.1) Potri.001G449100 [exp] 68 / 6e-13 AT1G32860 483 / 3e-170 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10000843 pacid=23148151 polypeptide=Lus10000843 locus=Lus10000843.g ID=Lus10000843.BGIv1.0 annot-version=v1.0 ATGAAGATGTCAATGGTGCATCAACTCTTCGTCTCGACTGCTTGTTGTTTCCTCCTCTTCCTTCTTCTCGTTTCCGATTTCTGCCATTTCGTAGGGGCCC AAGGAATTGGAGTGACGATAGCAAGAGAATGCAAAACCGTGCCAACACCAGAAGAAATCATTGCGCTATGCCTAAAAATCAACGCAAAAAGGGTGAGGCT CTACAACGCCTACAAAGACCGCAACCTGTTGGAAGCGTTTCAAGCCGAAACTGAAAAATTCGAGGTAACTGTCGGGGTATCAAATGACGATGTTATGAGC ATTGTCAGAGGGAATAACAGCGCCGTCGACTGGCTGACGAACAACATCATGCCCTTTGTCAATGGCGTGTCTTTCCGTTGCATTGTAGTAGGGGGGACCC TGACTCGTGTCGATAGTGAGTATGCAAACTCGGTCTATCAGGCCCTGGTCCAGCTTCTAAAGGCTCAGGCTAGCATGGACCTGATGATCCCCATGGGGAT CGAGGTGGACCATGGCTTATTAGTTCCCAATCAAACGCTATACCCTTCTGATGGTGAATTTGCCGGTGGACTTGTCCCCGTCTTGCAGTCCATTTTCGAG GTTTTGCTCATAAATAAAGGCGTGCTCATCGTTGACCTTTACCCGATGACCAGGTACTATGAGGACTCCTACTACCAAAATCTCCAGCAACAGTTCCTTT GGATGGGCGAAACCGACGATGCTACGATCAGCGACAATGGGGTTACTTACCACAACATCTACGAGAGCGGGATCGAAATGTTCTACTAG
AA sequence Show only first row Show all	>Lus10000843 pacid=23148151 polypeptide=Lus10000843 locus=Lus10000843.g ID=Lus10000843.BGIv1.0 annot-version=v1.0 MKMSMVHQLFVSTACCFLLFLLLVSDFCHFVGAQGIGVTIARECKTVPTPEEIIALCLKINAKRVRLYNAYKDRNLLEAFQAETEKFEVTVGVSNDDVMS IVRGNNSAVDWLTNNIMPFVNGVSFRCIVVGGTLTRVDSEYANSVYQALVQLLKAQASMDLMIPMGIEVDHGLLVPNQTLYPSDGEFAGGLVPVLQSIFE VLLINKGVLIVDLYPMTRYYEDSYYQNLQQQFLWMGETDDATISDNGVTYHNIYESGIEMFY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10000843 [exp]	0	1
AT5G12180		CPK17	calcium-dependent protein kina...		Lus10000889 [exp]	1.0	1.0000
					Lus10001326 [exp]	1.4	1.0000
AT1G18100		MFT, E12A11	MOTHER OF FT AND TFL1, PEBP (p...		Lus10002592 [exp]	1.7	1.0000
					Lus10004351 [exp]	2.0	1.0000
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	2.2	1.0000
					Lus10022172 [exp]	2.4	1.0000
					Lus10026755 [exp]	2.6	1.0000
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10013823 [exp]	2.8	1.0000
					Lus10014857 [exp]	3.0	1.0000
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10015566 [exp]	3.2	1.0000

Compare expression of checked genes

Lus10000843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.