Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26830 135 / 5e-35 O-Glycosyl hydrolases family 17 protein (.1) AT3G07320 134 / 6e-35 O-Glycosyl hydrolases family 17 protein (.1) AT2G01630 130 / 6e-34 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G27500 127 / 9e-33 Glycosyl hydrolase superfamily protein (.1.2.3) AT1G32860 128 / 1e-32 Glycosyl hydrolase superfamily protein (.1) AT3G57270 125 / 1e-32 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT3G13560 128 / 2e-32 O-Glycosyl hydrolases family 17 protein (.1.2.3) AT4G29360 126 / 6e-32 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G16260 123 / 1e-31 Glycosyl hydrolase superfamily protein (.1) AT5G56590 123 / 1e-30 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000843 [exp] 290 / 2e-96 AT3G57270 88 / 4e-20 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10000842 [exp] 142 / 1e-41 AT3G13560 54 / 6e-10 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10002807 [exp] 131 / 2e-34 AT3G57240 339 / 7e-116 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10001183 [exp] 132 / 6e-34 AT5G20870 628 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10043075 [exp] 131 / 2e-33 AT5G20870 631 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10014109 [exp] 125 / 2e-32 AT3G57270 361 / 1e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10034607 [exp] 125 / 2e-31 AT2G01630 691 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10031037 [exp] 123 / 2e-31 AT3G57240 312 / 3e-105 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10014108 [exp] 125 / 4e-31 AT3G57270 366 / 3e-123 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G255100 [exp] 136 / 2e-36 AT4G16260 369 / 9e-128 Glycosyl hydrolase superfamily protein (.1) Potri.006G046100 [exp] 133 / 3e-35 AT3G57270 370 / 4e-128 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.005G172000 [exp] 131 / 2e-34 AT1G77780 338 / 6e-115 Glycosyl hydrolase superfamily protein (.1) Potri.018G000900 [exp] 131 / 1e-33 AT4G31140 667 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G247900 [exp] 128 / 1e-32 AT3G07320 653 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.009G163700 [exp] 123 / 2e-31 AT2G27500 499 / 1e-177 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.006G216700 [exp] 124 / 6e-31 AT5G20870 633 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G048100 [exp] 120 / 2e-30 AT3G57270 382 / 6e-133 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.018G068600 [exp] 122 / 3e-30 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G089200 [exp] 119 / 4e-30 AT1G77780 309 / 6e-104 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10000844 pacid=23148141 polypeptide=Lus10000844 locus=Lus10000844.g ID=Lus10000844.BGIv1.0 annot-version=v1.0 ATGGGCCTGGGTTTGCTGGTAACGGGTTCGGGGCTGGGTACGACGATATCGGGTTTGGTTTGGGCAGAGGGATTTGGCCGTTTCAAGGAGTGGAGCACGG CGGTGGAACTGGCTTTGGCGCCGGAGCCGGCGGAGGAGGAGACAGTAACGCATGGCAGTTCGACAATGCAGGAAATGGATTCGGTGTCGGTGGTGGTGCC GGCGGCGGTGGCGGAGGTGATTGCCTCTCCTGGCCTGATTTGGCGATTTCTACTCTTGGGAATGGACTCAAATGAAGAGAAAGGGGCACAAGGGATTGGG GTGACGATAACGAGAGAATGCAAAACCGTGCCATCACCGAAAGAAATCTTCAATCTATGCCTAAAATTCAACGCGAAAAGGGTTAGGCTCTACGACGCCT TCAAAGATCGCGACCTGTTGGAAGTGTTTCGAAACCAATTGATCCAGGTCGCAGTCGGGGTATCAAACGATGACGTGGTGCGCATCGCCGATGGGAAAGA GACCTTCGCCATCGATTGGCTGAAGAACAACATCGTGCCCTTCGTCAAGGACGTGAATTTCCGTTGCATTGTGGTGGGCCACGACATGACTCGTGTCAAT ATCGAGGCAGCAACCTCGGTCTACCAGGCCGTGGTCCACCTTCATAAGGCCCAGGCTAGCCTGGGCATAATGATCCCCATGGGGATCGAGGTGAACCATG ATTTATTAGTGGGCGGGAAAACACTTGTCCCTTCTGATGGCGAATTCAACCCGCAATTCGTCCCTGTCATGCGATCCATCCTTCAGGTCTTGCACACGAA TAACGGTGTGCTCATCGTTGACCTTTATCCGATGACCAGGTATTATGCAGAGTTCTTCGAGTACCAAAAGCTCCCGCTAAATTTCGTTCTGTTGGGCGAT ACAGACAACGATACGCTCACCGAACTTAAGCGGTCTTACCATAATATCTATGAGAGCGGGCTTGATTTGTTCTACTCGGCGATGGAGAAGCTCGGGATTA CGGGGATGAGGATTCTCGTTGGCGAGACAGGGTGGCCATCGGACGGAGAGAGAGAGCTCGCGAATATCGGGTACGCGGCTGTGTACACCAACCACTTGGT GGATAGGTTGGGCACCTTCAAAGGAACGCCGAGCAGGAGTTGGCCCGTAGAGACATTTATTCGAACACTTTACGTGCAAGACAAGTGGAAACCGAAGGGA GATGGGTACGGGTTGTTTTTCACTAATGGGACGGCTGCAAATCCTTTGATAAAATTCACCCACGTTTGA
AA sequence Show only first row Show all	>Lus10000844 pacid=23148141 polypeptide=Lus10000844 locus=Lus10000844.g ID=Lus10000844.BGIv1.0 annot-version=v1.0 MGLGLLVTGSGLGTTISGLVWAEGFGRFKEWSTAVELALAPEPAEEETVTHGSSTMQEMDSVSVVVPAAVAEVIASPGLIWRFLLLGMDSNEEKGAQGIG VTITRECKTVPSPKEIFNLCLKFNAKRVRLYDAFKDRDLLEVFRNQLIQVAVGVSNDDVVRIADGKETFAIDWLKNNIVPFVKDVNFRCIVVGHDMTRVN IEAATSVYQAVVHLHKAQASLGIMIPMGIEVNHDLLVGGKTLVPSDGEFNPQFVPVMRSILQVLHTNNGVLIVDLYPMTRYYAEFFEYQKLPLNFVLLGD TDNDTLTELKRSYHNIYESGLDLFYSAMEKLGITGMRILVGETGWPSDGERELANIGYAAVYTNHLVDRLGTFKGTPSRSWPVETFIRTLYVQDKWKPKG DGYGLFFTNGTAANPLIKFTHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07320			O-Glycosyl hydrolases family 1...		Lus10000844 [exp]	0	1
AT3G50410	DOF	OBP1, AtDof3. 4	OBF binding protein 1 (.1)		Lus10019646 [exp]	2.4	0.9177
AT3G55930			Pre-mRNA-splicing factor 3 (.1...		Lus10031931 [exp]	7.2	0.9297
AT3G60670			PLATZ transcription factor fam...		Lus10015881 [exp]	13.1	0.9264
					Lus10000191 [exp]	17.2	0.9222
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10028754 [exp]	17.4	0.9239
AT5G48090		ELP1	EDM2-like protein1 (.1.2)		Lus10002268 [exp]	20.9	0.9225
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10041443 [exp]	24.2	0.9172
					Lus10039879 [exp]	28.0	0.8985
AT3G28920	ZF_HD	ATHB34, ZHD9	ZINC FINGER HOMEODOMAIN 9, hom...		Lus10012827 [exp]	28.2	0.8993
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007660 [exp]	31.7	0.8975

Compare expression of checked genes

Lus10000844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.