Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23530 286 / 4e-91 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) AT4G37110 246 / 1e-77 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) AT1G67780 108 / 3e-25 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) AT1G67270 107 / 7e-25 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) AT5G38690 87 / 3e-18 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) AT1G09060 55 / 7e-08 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) AT1G62310 42 / 0.001 transcription factor jumonji (jmjC) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019647 [exp] 685 / 0 AT2G23530 301 / 5e-97 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10023846 [exp] 210 / 1e-64 AT2G23530 272 / 2e-87 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10017575 [exp] 110 / 7e-26 AT5G38690 409 / 8e-137 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) Lus10021004 [exp] 102 / 1e-25 AT4G37110 110 / 7e-29 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10033539 [exp] 108 / 4e-25 AT5G38690 405 / 2e-134 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) Lus10037812 [exp] 52 / 7e-07 AT1G09060 957 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10017092 [exp] 51 / 1e-06 AT1G09060 962 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10020084 [exp] 47 / 3e-05 AT4G21430 529 / 2e-172 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Lus10015260 [exp] 45 / 0.0001 AT3G07610 627 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G036200 [exp] 320 / 4e-104 AT2G23530 320 / 6e-102 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Potri.009G108400 [exp] 220 / 1e-67 AT2G23530 253 / 8e-79 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Potri.006G257400 [exp] 111 / 4e-26 AT5G38690 270 / 2e-81 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) Potri.018G024400 [exp] 101 / 6e-23 AT5G38690 271 / 1e-81 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) Potri.012G044400 [exp] 91 / 3e-20 AT4G37110 96 / 2e-22 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Potri.013G019000 [exp] 57 / 2e-08 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.004G006200 [exp] 47 / 2e-05 AT1G11950 870 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.011G041400 [exp] 44 / 0.0002 AT4G21430 465 / 2e-148 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.005G091200 [exp] 42 / 0.0008 AT3G07610 732 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10497 [flax] [poplar] zf-4CXXC_R1 Zinc-finger domain of monoamine-oxidase A repressor R1
Representative CDS sequence Show only first row Show all	>Lus10000845 pacid=23148144 polypeptide=Lus10000845 locus=Lus10000845.g ID=Lus10000845.BGIv1.0 annot-version=v1.0 ATGTCGCCTCCGGAGAACTGCGAGCTCCGATCACCGGACGAGCTCCTCCAGACGGGGAAGTCGGTCTACGAACAGACGAGAGAAGAGAGGATCAAAGCCA ACTTGGAGCGAATGCAGAAACTAGGTCTCAAGGACCTCTCTCTCAACCTCAGTTCCGTTTCCCGGACCAGGAATCCCAAGCCCAGAAGCTACATCAAGAA CGCCGAGAAGCTCGAGCGTCTTCCTTCGCCGCCCCCTCTCCGCCGATCTTCTAGGCTGCATAAGGTAGATCAGCCTAGCTACAATGAAAAGAGCTTATCG AAGAACGATGTGATAGAGGAGGAAGGTTTGAAATACAGAAAGCGGGAGGTTTACTCGGAAGAATATGCGAAGAGACTTGGAGGCACAGAGAGAAGCTGGA CTCTTTTTGTGGATGGATATGGGAAAGACGGTAGAAGGATTTATGATTCTTTCAAAGGGAAGACTTGCCACCAATGCAGGCAGAAAACTCTTGGCCATCG AACTCGCTGTAGCGAATGTCAGATGGTGCAAGGGCAGTTTTGTGGAGATTGTTTGTACATGAGATATGGTGAGCATGTCCTTGAAGCCTTAGAGAATCCC AACTGGACATGTCCTGTCTGCCGCGGCATCTGCAACTGCAGTTTGTGTCGACAATCAAAAGGACTCGCTCCCACCGGAATTCTTTACCGAAAGATAACAC AGTTGGGCTACAAGTCAGTTGCTCATTACCTCATCGAGACCAAACGTCCAGAAAACAATGCTGCAAGCAACACCTCTGATGAACCTCTTTCAAGTACTCA AGCTTCTGCCAAAAGGTCACTTCCATTTTCGAATTCGGAGGAGCCACCGAATTCTAAACTGCATAATGTTTCGAAGACTGAAGAGCCCCACTCCGAATGC GAATTGCATGATGTTGCATTGATCAAGACTGAACAACAAGAGGAAGAACACAAACTAGGCAGCGATACTCCAGTGGCTAATCGTGAGAAGATGATGTCAC CCTGTTCTTCTGTTTCCAATGACGAAACAGCAGGCACTGAATATCCGGATTTCGTGTCAGCTACTCCTCCCAAGTCCGAGGTGAGAAGGGGAGATAACAA ACGCAAAGGTGTCGTCGTCGAGGAGGAAGAGTTGGATGGTAAAAAGAGCACTGCAAATCCAAGTCGCTCAAAGAAGAATGTATCATCAGCAGCTATCAAA GCAGCAAGTGCTGATAGCGTTGGCGCTAGAGTGAGGCAGAGGCGCAGGACAACAACCAATGTTGGTGAATGA
AA sequence Show only first row Show all	>Lus10000845 pacid=23148144 polypeptide=Lus10000845 locus=Lus10000845.g ID=Lus10000845.BGIv1.0 annot-version=v1.0 MSPPENCELRSPDELLQTGKSVYEQTREERIKANLERMQKLGLKDLSLNLSSVSRTRNPKPRSYIKNAEKLERLPSPPPLRRSSRLHKVDQPSYNEKSLS KNDVIEEEGLKYRKREVYSEEYAKRLGGTERSWTLFVDGYGKDGRRIYDSFKGKTCHQCRQKTLGHRTRCSECQMVQGQFCGDCLYMRYGEHVLEALENP NWTCPVCRGICNCSLCRQSKGLAPTGILYRKITQLGYKSVAHYLIETKRPENNAASNTSDEPLSSTQASAKRSLPFSNSEEPPNSKLHNVSKTEEPHSEC ELHDVALIKTEQQEEEHKLGSDTPVANREKMMSPCSSVSNDETAGTEYPDFVSATPPKSEVRRGDNKRKGVVVEEEELDGKKSTANPSRSKKNVSSAAIK AASADSVGARVRQRRRTTTNVGE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23530			Zinc-finger domain of monoamin...		Lus10000845 [exp]	0	1
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10007522 [exp]	1.0	0.9799
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10013226 [exp]	2.4	0.9655
AT4G33400			Vacuolar import/degradation, V...		Lus10042656 [exp]	3.2	0.9731
AT2G23530			Zinc-finger domain of monoamin...		Lus10019647 [exp]	3.2	0.9572
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10030746 [exp]	5.5	0.9546
AT4G22860			Cell cycle regulated microtubu...		Lus10006677 [exp]	6.7	0.9518
AT5G25090		AtENODL13	early nodulin-like protein 13 ...		Lus10026880 [exp]	6.9	0.9521
AT1G16630			unknown protein		Lus10006845 [exp]	7.5	0.9608
AT2G07170			ARM repeat superfamily protein...		Lus10008545 [exp]	7.7	0.9504
AT4G14330			P-loop containing nucleoside t...		Lus10021167 [exp]	10.2	0.9542

Compare expression of checked genes

Lus10000845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.