Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23280 238 / 3e-78 MAK16 protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019648 [exp] 281 / 4e-96 AT1G23280 285 / 4e-97 MAK16 protein-related (.1) Lus10019649 [exp] 246 / 2e-81 AT1G23280 296 / 2e-100 MAK16 protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G085300 [exp] 262 / 8e-88 AT1G23280 298 / 7e-101 MAK16 protein-related (.1) Potri.015G083700 [exp] 261 / 2e-87 AT1G23280 296 / 3e-100 MAK16 protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04874 [flax] [poplar] Mak16 Mak16 protein C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10000846 pacid=23148150 polypeptide=Lus10000846 locus=Lus10000846.g ID=Lus10000846.BGIv1.0 annot-version=v1.0 ATGGTGAAAGTCTTGATCTTTTGCTTGTGTTACAGAATCACGGCTGGAAACTTCTGTAGAAACCCGTACAATGTTACCGGACTTTGCAATCGGAGCTCTT GTCCTCTCGCCAACAGTCGTTACGCCACCATCCGTGACCATGACGGTGTGTTCTATTTGTACATGAAAACTATAGAGAGAGCTCATAAACCTAATCAGTT ATGGGAAAGATTGAAGTTGCCTCGGAACTACGAGAAGGCCCTTGAACTTATTAACAAGCATATGATGTACTGGCCTCAGTTGCTTGTTCACAAAACAAAG CAGCGGCTGACTAAAATGACTCAGATGCGCATTCGTATGCGGAAGTTAGCTCTCAAGACGAGGGAGATGGTGGTAACACTCCCTAGAAAAGAGATTAAGA GGGAGGCAAGAAGGGAGGAAAAGGCCGAAAAGGCTGCAGTTTTGGACAAGGCTATTGAAAAAGAATTGCTGGAACGTCTGAATACGGGAGTGTATGGAGA GATATATAACTATCCAGTTAACAAGTACTTGGAAATTCTTGAGAAAAAGGAGCTCCAGGTTGAGGTTGAAGAAGAGGAAGAAGAAGAGGAGGAAGCTGAG ATCGAATATGTTGAAGGTGAATTTGAGGAGGAAGAGGAAGAGGACATAGAAGATTTTGGCAACATGGCATTAGCTTCTCAGGAGGATCATGGTAAAGTCC TAATTCTATATGATGTAGTTGTAATCACTTAA
AA sequence Show only first row Show all	>Lus10000846 pacid=23148150 polypeptide=Lus10000846 locus=Lus10000846.g ID=Lus10000846.BGIv1.0 annot-version=v1.0 MVKVLIFCLCYRITAGNFCRNPYNVTGLCNRSSCPLANSRYATIRDHDGVFYLYMKTIERAHKPNQLWERLKLPRNYEKALELINKHMMYWPQLLVHKTK QRLTKMTQMRIRMRKLALKTREMVVTLPRKEIKREARREEKAEKAAVLDKAIEKELLERLNTGVYGEIYNYPVNKYLEILEKKELQVEVEEEEEEEEEAE IEYVEGEFEEEEEEDIEDFGNMALASQEDHGKVLILYDVVVIT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23280			MAK16 protein-related (.1)		Lus10000846 [exp]	0	1
AT1G80750			Ribosomal protein L30/L7 famil...		Lus10040040 [exp]	1.4	0.9366
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10003379 [exp]	5.1	0.9277
AT1G23280			MAK16 protein-related (.1)		Lus10019648 [exp]	5.5	0.8813
AT2G18110			Translation elongation factor...		Lus10037618 [exp]	9.4	0.9138
AT4G24830			arginosuccinate synthase famil...		Lus10012800 [exp]	12.7	0.9080
AT2G34970			Trimeric LpxA-like enzyme (.1)		Lus10033841 [exp]	13.7	0.8712
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10004874 [exp]	13.9	0.9231
AT2G24990			Serine/threonine-protein kinas...		Lus10002728 [exp]	15.6	0.9007
AT5G20850		ATRAD51	RAS associated with diabetes p...		Lus10039928 [exp]	16.4	0.8919
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10000421 [exp]	18.2	0.9041

Compare expression of checked genes

Lus10000846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.