Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58520 499 / 1e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT5G48040 226 / 1e-70 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G71850 190 / 4e-56 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G39120 186 / 2e-55 WTF9 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G21970 164 / 1e-46 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G45790 162 / 1e-46 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT4G24320 158 / 1e-44 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G63090 151 / 7e-42 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G01037 139 / 1e-36 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G31290 134 / 2e-35 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015979 [exp] 681 / 0 AT3G58520 564 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10011327 [exp] 226 / 1e-70 AT5G48040 425 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10012201 [exp] 225 / 2e-70 AT5G48040 424 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10035074 [exp] 191 / 3e-55 AT1G71850 479 / 5e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10017896 [exp] 190 / 8e-55 AT1G71850 478 / 7e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10038710 [exp] 180 / 9e-53 AT2G39120 467 / 4e-164 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000096 [exp] 159 / 8e-45 AT3G63090 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000098 [exp] 157 / 2e-44 AT3G63090 557 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10016529 [exp] 150 / 1e-41 AT5G21970 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G195900 [exp] 545 / 0 AT3G58520 578 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G230900 [exp] 236 / 3e-74 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.013G115500 [exp] 204 / 2e-59 AT1G71850 474 / 1e-161 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.008G036600 [exp] 187 / 1e-55 AT2G39120 509 / 0.0 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.004G223200 [exp] 179 / 4e-52 AT4G24320 437 / 4e-152 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.005G191100 [exp] 152 / 3e-42 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.016G030300 [exp] 152 / 3e-42 AT5G45790 466 / 8e-163 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G220000 [exp] 152 / 4e-42 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G218100 [exp] 149 / 6e-41 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G245100 [exp] 130 / 4e-34 AT1G06440 544 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [flax] [poplar] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Lus10000847 pacid=23141941 polypeptide=Lus10000847 locus=Lus10000847.g ID=Lus10000847.BGIv1.0 annot-version=v1.0 ATGCATGTTAGCTCCCCAACTGGGTTCCTCACTGCTCAGTCGTTCGCGGACTGGCAGAAGCTGCTCGGCCTCACAGTCCCCGTTCTTCGCTTCATGCGCA GGTATCCAACTCTTTTCGAAGAATTTCCACACGCCCGGTACGCGAATTTGCCATGCTTTCGGCTCACCGAAACTGCACAATTGTTAGATTCACAAGAACA GAACATTCACCAAGCTCACGAGAGTAAGACTGTGGAGAGGCTGGCTAGGGTTCTTATGATGATGAAAACTAGGACAGTACCAATTCAGTCACTCCACCCA CTCAAATGGGATTTAGGTCTACCAGATCATTTCGAAAGGACGTTGGTTCCCAAGTACCCCGATCATTTCCGGATACTCAAGGCAACTAACGGGATCGGGT GCTTGCAGCTTGCGGACTGGAAGGACGAGTACGCGGTATCTGAGCTGCTGAGGAGCCACGAGAGCAAAGAAACTGGCGATGAGTATAGACCATTTAAGCG AGGGCAGGCAGCATTGGCCTTCCCAATGAGTTTTCCGAGAGGGTACGGAGGTCAGAAGAAAGTAAGAGCGTGGATGGACGAGTTTCATAAGCTTCCTTAT ATCTCACCATACGAGGACTCTCGACGGATTGACCCTGAGAGCGAGCTGATGGAGAAGAGAGTCGTTGGCGTCCTGCACGAGCTCTTGAGCTTGACGATCC ACAAGAAGACCAAAAGGAACTACCTTAGGTGCCTGAGAGAGGAACTCATCCTGCCACATAAGTTCACGAGGCTATTCACGAGGTACCCGGGGATATTCTA CCTGTCTTTGAAATGTAAAACAACCACAGTCGCGCTCAGAGAAGGCTACAGAAAGGGGAAACTGGTCAACCCGCATCCTCTGGCTCGTCTAAGGGAGAAA GTCTATCACGTGATGCGAACCGGAGTTCTTTACCGCGGCAAAGGTGCTAGCATGGTTCCTCCGGAGATGCTGATGAACGATGCAGGCGACGAAGAATCCG GGCAAGAAGAAGAGTCCGAGGACGACGATGGGTCTTGCTATGACGAAATGTCCGATGATGAATGTGAAGACGACCGACATTGA
AA sequence Show only first row Show all	>Lus10000847 pacid=23141941 polypeptide=Lus10000847 locus=Lus10000847.g ID=Lus10000847.BGIv1.0 annot-version=v1.0 MHVSSPTGFLTAQSFADWQKLLGLTVPVLRFMRRYPTLFEEFPHARYANLPCFRLTETAQLLDSQEQNIHQAHESKTVERLARVLMMMKTRTVPIQSLHP LKWDLGLPDHFERTLVPKYPDHFRILKATNGIGCLQLADWKDEYAVSELLRSHESKETGDEYRPFKRGQAALAFPMSFPRGYGGQKKVRAWMDEFHKLPY ISPYEDSRRIDPESELMEKRVVGVLHELLSLTIHKKTKRNYLRCLREELILPHKFTRLFTRYPGIFYLSLKCKTTTVALREGYRKGKLVNPHPLARLREK VYHVMRTGVLYRGKGASMVPPEMLMNDAGDEESGQEEESEDDDGSCYDEMSDDECEDDRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58520			Ubiquitin carboxyl-terminal hy...		Lus10000847 [exp]	0	1
AT4G29530			Pyridoxal phosphate phosphatas...		Lus10008573 [exp]	7.9	0.6636
AT1G04380			2-oxoglutarate (2OG) and Fe(II...		Lus10009240 [exp]	11.2	0.6570
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10005651 [exp]	17.9	0.6324
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10041033 [exp]	25.3	0.5754
					Lus10016844 [exp]	26.1	0.5869
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10028717 [exp]	28.5	0.6036
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10041034 [exp]	29.9	0.5798
AT4G26400			RING/U-box superfamily protein...		Lus10006449 [exp]	30.7	0.6036
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10043274 [exp]	34.5	0.5291
AT1G21150			Mitochondrial transcription te...		Lus10039174 [exp]	36.4	0.5965

Compare expression of checked genes

Lus10000847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.