Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42520 637 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58570 634 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 627 / 0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT5G63120 319 / 1e-103 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G14610 312 / 3e-100 DEAD box RNA helicase family protein (.1.2) AT3G01540 308 / 4e-99 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT1G55150 297 / 4e-96 DEA(D/H)-box RNA helicase family protein (.1) AT3G06480 291 / 9e-89 DEAD box RNA helicase family protein (.1) AT2G33730 283 / 2e-88 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G31970 262 / 4e-82 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015977 [exp] 722 / 0 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000849 [exp] 719 / 0 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015976 [exp] 717 / 0 AT2G42520 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016207 [exp] 678 / 0 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015978 [exp] 586 / 0 AT3G58570 535 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029337 [exp] 568 / 0 AT2G42520 728 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030075 [exp] 530 / 0 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10001074 [exp] 526 / 0 AT3G58570 533 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019484 [exp] 308 / 4e-99 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G007900 [exp] 621 / 0 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G061900 [exp] 618 / 0 AT2G42520 786 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G196000 [exp] 618 / 0 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G217800 [exp] 617 / 0 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G083000 [exp] 306 / 2e-98 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G084600 [exp] 305 / 8e-98 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G071400 [exp] 308 / 2e-97 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.003G038300 [exp] 294 / 7e-95 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G347100 [exp] 300 / 2e-94 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.019G130900 [exp] 294 / 2e-94 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10000848 pacid=23141942 polypeptide=Lus10000848 locus=Lus10000848.g ID=Lus10000848.BGIv1.0 annot-version=v1.0 ATGGCCTGTGCCCAGACAGGTTCGGGAAAGACTGCTGCTTTTTGCTTTCCTATAATTAATGGAATTATGCGGGATACTCATATACAGAGACCTCGTGCTC CTAGAACTGCATTCCCTCTTGCTCTTATTCTCTCACCTACAAGAGAACTATCTTCTCAGATACATGATGAAGCCAAGAAATTTTCTTATCAAACTGGTGT AAGAGTGGTTGTTGCTTATGGAGGAGCACCGATTGTGAATCAGTTGAGAGAGCTTGAAAGGGGAGTTGATATTCTTGTAGCAACTCCTGGTCGATTGGTT GACTTGCTTGAGAGGGCTAGGGTGTCATTGCAGATGATCAGATTCTTGGCACTTGATGAGGCCGATAGGATGCTTGATATGGGATTTGAGCCTCAGATCA GGAAGATAGTTGAACAATTGGACATGCCCCCATCTGGAATGAGGCAGACTATGCTTTTCAGTGCTACTTTCCCAAAAGAAATACAGAGACTTGCATCAGA TTTCCTGTCAAATTACATTTTCTTGGCTGTTGGAAGGGTTGGCTCCAGCACTGACTTGATTCTTCAGAGAGTTGAGTATGTTCAAGATGCTGACAAGAGA AGCCATCTCATGGACCTTCTTCATGCACAGAAAGAAAGTGAAGCTAATAGCAAGCCATCCTTGACATTAGTGTTTGTGGAGACCAAGAAGGGAGCTGATT CTCTGGAGTATTGGTTGTGTCAAAATGGGTTCCCCGCTACTACAATTCATGGTGATAGATCACAGCAGGAAAGAGAACTTGCATTGAGATCGTTCAAGAG TGGAAGGACCCCAATTCTAGTGGCGACAGATGTAGCTGCCCGTGGTCTGGACATACCTCACGTGGCTCATGTCGTCAACTTCGATCTCCCCAATGACATT GACGATTACGTCCACAGAATAGGACGTACCGGGCGAGCTGGGAAATCTGGTCTGGCTACAGCCTTCTTCAACGACAACAACGGCTCATTGGCAAGGTCAC TAGTAGAATTGATGCAAGAAGCAAACCAAGAAGTTCCCGCTTGGCTAGTCCGTTATGCGTCACGCTCGTCGTACGGTGGAGGCAAGAATCGCCGATCTGG CGGAGGGCGCTTTGGTGGACGAGACATCAGAAGGGAAGGATCTTTCAGTAGAGGTGGTGGAGATTATCACGGTGGAGGAGGAGGCAGCGGCGGCGGTGGT TACGGAGTCCCCGGAGGTGGTTATGGCATGGGTTCAGGTGTGACTAGCGCTTGGGATTAG
AA sequence Show only first row Show all	>Lus10000848 pacid=23141942 polypeptide=Lus10000848 locus=Lus10000848.g ID=Lus10000848.BGIv1.0 annot-version=v1.0 MACAQTGSGKTAAFCFPIINGIMRDTHIQRPRAPRTAFPLALILSPTRELSSQIHDEAKKFSYQTGVRVVVAYGGAPIVNQLRELERGVDILVATPGRLV DLLERARVSLQMIRFLALDEADRMLDMGFEPQIRKIVEQLDMPPSGMRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLILQRVEYVQDADKR SHLMDLLHAQKESEANSKPSLTLVFVETKKGADSLEYWLCQNGFPATTIHGDRSQQERELALRSFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDI DDYVHRIGRTGRAGKSGLATAFFNDNNGSLARSLVELMQEANQEVPAWLVRYASRSSYGGGKNRRSGGGRFGGRDIRREGSFSRGGGDYHGGGGGSGGGG YGVPGGGYGMGSGVTSAWD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42520			P-loop containing nucleoside t...		Lus10000848 [exp]	0	1
AT5G40490			RNA-binding (RRM/RBD/RNP motif...		Lus10032124 [exp]	1.0	0.8854
AT3G21400			unknown protein		Lus10037507 [exp]	3.7	0.8726
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10004301 [exp]	10.6	0.8601
AT2G15000			unknown protein		Lus10020971 [exp]	11.5	0.8434
AT3G21400			unknown protein		Lus10006520 [exp]	13.4	0.8316
AT2G16485			nucleic acid binding;zinc ion ...		Lus10018078 [exp]	16.9	0.8306
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Lus10035410 [exp]	18.7	0.8197
AT5G43970		ATTOM22-V, TOM2...	TRANSLOCASE OUTER MITOCHONDRIA...		Lus10024950 [exp]	19.1	0.8620
AT5G01090			Concanavalin A-like lectin fam...		Lus10021117 [exp]	23.7	0.8240
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Lus10018062 [exp]	28.4	0.7679

Compare expression of checked genes

Lus10000848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.