Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42520 769 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 756 / 0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT3G58570 755 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G63120 352 / 2e-114 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G14610 345 / 8e-111 DEAD box RNA helicase family protein (.1.2) AT3G01540 342 / 7e-110 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT1G55150 336 / 5e-109 DEA(D/H)-box RNA helicase family protein (.1) AT2G33730 318 / 3e-99 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G06480 322 / 3e-98 DEAD box RNA helicase family protein (.1) AT5G51280 305 / 8e-96 DEAD-box protein abstrakt, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015976 [exp] 902 / 0 AT2G42520 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016207 [exp] 827 / 0 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015977 [exp] 810 / 0 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000848 [exp] 719 / 0 AT2G42520 655 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029337 [exp] 719 / 0 AT2G42520 728 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030075 [exp] 587 / 0 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015978 [exp] 578 / 0 AT3G58570 535 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10001074 [exp] 522 / 0 AT3G58570 533 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10032133 [exp] 343 / 5e-110 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G196000 [exp] 754 / 0 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G217800 [exp] 750 / 0 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G061900 [exp] 748 / 0 AT2G42520 786 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G007900 [exp] 748 / 0 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G083000 [exp] 345 / 3e-111 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G084600 [exp] 342 / 1e-109 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G071400 [exp] 345 / 3e-109 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.003G038300 [exp] 333 / 7e-108 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G347100 [exp] 337 / 4e-106 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.010G152400 [exp] 342 / 3e-105 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10000849 pacid=23141939 polypeptide=Lus10000849 locus=Lus10000849.g ID=Lus10000849.BGIv1.0 annot-version=v1.0 ATGACTACTCGATGGGCTGATTCTGTCGCTAGCTCAGCATCAGACAATGCCGGTTCAGCCTCTGGCCGTTCTGCCTACGTCCCACCCCACCAACGTAATA GACCACCATCTGCTGCTCCTGCAGCTCAACCCTTTGCGGCGCCATCTCCGGCTAATGACCGCGTAGGAGGCTATGGTGGACCACCAGGAGGTGGCGGTGG TTATAATAATAATAATAATAGAGGAGGTGGATGGAACCGAGAGGTGAATCCCTTTGGAGAAGAAGAAGCCGATGCAGAATGTGCACCGAGCGGGCAAGAT AGTACTGCCATTAACTTTGATGCATATGAAGATATTCCCGTGGATGCTAGTGGGGACAATGTGCCTCCTCCTGTAAATACCTTCGCAGAGATTGATTTGG GTGATGCAGTAAATCAAAATATACGGAGATGCAAGTATGTGAGACCAACACCCGTTCAGCGCCATGCAATCCCTATATTGCTTGCCGGACGTGACTTGAT GGCCTGTGCTCAGACAGGTTCGGGAAAGACTGCTGCTTTTTGCTTTCCGATAATTAATGGAATTATGCGGGATACTCATATACAGAGACCTCGTGCTCCT AGAACTGCATTCCCTCTTGCTCTTATTCTCTCACCTACAAGAGAACTATCTTCTCAGATACATGATGAAGCCAAGAAATTTTCTTATCAAACTGGTGTAA GAGTGGTTGTTGCTTATGGAGGGGCACCAATTATGAATCAGTTGAGAGAACTTGAAAGGGGAGTTGATATTCTCGTAGCTACTCCTGGTCGATTGGTTGA TTTGCTTGAGAGGGCTAGGGTGTCATTGCAGATGATCAGATTCTTGGCACTTGATGAGGCTGATAGGATGCTTGATATGGGATTTGAGCCTCAGATCAGA AAGATAGTTGAACAAGTAGACATGCCCCCATCCGGGATGAGGCAGACTATGCTTTTCAGTGCTACTTTTCCAAAAGAAATACAGAGACTTGCATCAGACT TCCTTTCAAATTACATTTTCTTGGCTGTTGGAAGGGTTGGCTCCAGCACTGATTTGATTCTTCAGAGAGTTGAATATGTCCAAGATGCTGACAAGAGAAG CCATCTCATGGACCTTCTTCATGCACAGAAAGAAAGTGAAGCTAACAGCAAGCCATCCTTGACATTAGTGTTTGTGGAGACCAAGAAGGGAGCCGATTCT CTGGAGTATTGGCTGTGTCAAAACAGGTTCCCCGCCACTACAATTCATGGTGATAGATCACAGCAGGAAAGAGAACTTGCATTGAGATCCTTCAAGAGTG GAAGGACACCAATTCTAGTTGCAACAGATGTAGCTGCTCGCGGTCTAGACATACCGCATGTGGCTCATGTCGTCAACTTCGACCTCCCCAACGACATCGA CGATTACGTCCACAGAATAGGACGAACCGGACGAGCTGGGAAATCTGGTCTGGCTACAGCCTTCTTCAACGACAACAACGGCTCATTGGCAAGGTCACTA GTAGAATTGATGCAAGAAGCAAACCAAGAAGTTCCCGCTTGGCTAGTCCGATACGCGTCACGCTCTTCATACGGTGGAGGCAAGAATCGCCGGTCTGGCG GAGGGCGCTTTGGTGGACGAGACATCAGAAGGGAAGGATCCTTCAGTAGGGGAGGTGGAGACTATCACGGTGGTGGCGGCGGCGGCGGTAGTTACGGCGT CCCCGGAGGTGGTTATGGCATGGGTTCAGGAGTGACGAGCGCTTGGGATTAG
AA sequence Show only first row Show all	>Lus10000849 pacid=23141939 polypeptide=Lus10000849 locus=Lus10000849.g ID=Lus10000849.BGIv1.0 annot-version=v1.0 MTTRWADSVASSASDNAGSASGRSAYVPPHQRNRPPSAAPAAQPFAAPSPANDRVGGYGGPPGGGGGYNNNNNRGGGWNREVNPFGEEEADAECAPSGQD STAINFDAYEDIPVDASGDNVPPPVNTFAEIDLGDAVNQNIRRCKYVRPTPVQRHAIPILLAGRDLMACAQTGSGKTAAFCFPIINGIMRDTHIQRPRAP RTAFPLALILSPTRELSSQIHDEAKKFSYQTGVRVVVAYGGAPIMNQLRELERGVDILVATPGRLVDLLERARVSLQMIRFLALDEADRMLDMGFEPQIR KIVEQVDMPPSGMRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLILQRVEYVQDADKRSHLMDLLHAQKESEANSKPSLTLVFVETKKGADS LEYWLCQNRFPATTIHGDRSQQERELALRSFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDNNGSLARSL VELMQEANQEVPAWLVRYASRSSYGGGKNRRSGGGRFGGRDIRREGSFSRGGGDYHGGGGGGGSYGVPGGGYGMGSGVTSAWD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42520			P-loop containing nucleoside t...		Lus10000849 [exp]	0	1
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10008407 [exp]	1.4	0.8966
AT1G45207			Remorin family protein (.2)		Lus10005708 [exp]	2.2	0.8600
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10026774 [exp]	3.2	0.8837
AT5G64030			S-adenosyl-L-methionine-depend...		Lus10020894 [exp]	3.3	0.8453
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10018651 [exp]	3.5	0.8765
AT4G16650			O-fucosyltransferase family pr...		Lus10004729 [exp]	4.5	0.8463
AT4G17950	AT-hook		AT hook motif DNA-binding fami...		Lus10040085 [exp]	4.6	0.8560
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10033597 [exp]	4.9	0.8597
AT4G01810			Sec23/Sec24 protein transport ...		Lus10007190 [exp]	5.3	0.8725
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10032510 [exp]	7.5	0.8356

Compare expression of checked genes

Lus10000849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.