Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58490 530 / 0 AtSPP1 sphingoid phosphate phosphatase 1, Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015975 [exp] 749 / 0 AT3G58490 585 / 0.0 sphingoid phosphate phosphatase 1, Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G062100 [exp] 595 / 0 AT3G58490 575 / 0.0 sphingoid phosphate phosphatase 1, Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Potri.006G196200 [exp] 579 / 0 AT3G58490 591 / 0.0 sphingoid phosphate phosphatase 1, Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [flax] [poplar] pap2 PF01569 [flax] [poplar] PAP2 PAP2 superfamily
Representative CDS sequence Show only first row Show all	>Lus10000850 pacid=23141938 polypeptide=Lus10000850 locus=Lus10000850.g ID=Lus10000850.BGIv1.0 annot-version=v1.0 ATGGAGAGCATAGCATTGTGGCAAGCGTCGGCTCTCTGTGGAATAGCATCCTGGATTGCCTTTTCCCCCTGCTTCAACGTCACCCACAAACTCCGATCTC TGCTCCAACCATGGGTCTCCCGCCACGTCGCCGCCGGAACCCCCGCCGTTCTCCGGATCCAGAAGTACCAGCATAAGTATTTGGATGCTTTGTTCTCCGG CTTGTCATGTGTGGTCTCCGTCCCCTTTTACACCGCCTTTCTTCCTTTCCTGTTCTGGAGTGGGCATGGGAAATTGGCTCGGCAGATGACACTTTTGATG GCTTTCTGTGATTATTCAGGCAACTGTATCAAGGATGTGGTGTCAGCTCCTAGACCTAGTAGCCCTCCAGTTAGGAGAGTTACTGCTACAAAGGATGAAG AAGACAATGCTTTGGAATATGGGTTGCCTTCTTCCCACACTCTCAATACTGTCTGTTTGTCCGGGTATCTTTTGTGCTATGTTTTGTCCTACATGCAAAA TCAGGATTTGTCATTAACTATGGCTGGAGTTGCCATGGTTTGCTTGCTTGTTGGCCTCACTGGTTGGGGAAGAATTTACCTCGGCATGCACAGCTTGATT GATATCATAGCTGGTCTTGTTTTCGGCATCCTGATCCTCGCCTTTTGGCTGACCGTCCATGACCGTATTGACAGCTTCATTGTCTCGGGACAAAATGTCA CTACATTTTGGGCCACCTTGAGCTTCTTGTTGCTCTTCGCTTATCCAACTCCCGAGTTCCCAACTCCAAGCTTCGAATTCCACACAGCCTTTGATGGTGT TGCATTCGGAATAGTGGCTGGAATCCAACAAACCTACCATCAGTTCCACCACGAAACGGTGCCAAGGATATGCACACCGGAGCTCCCAATCCAGGCCTTC CTGGGGAGAGTGGCAGTTGGAATCCCGACGATTCTCCTGGTCAAGTTCTGCAGCAAAGCCCTGGCCAAGTGGATCCTCCCAGTAGTGTCGAACACATTGG GTATTCCCATAAGATCAACCACTTACATACCGGTACTAAATGCAGCAGGGAAGAAACCAGTCAAGCAGCAGCAGCAGTCAGGAGGGTATATCCAGAAACT ATTCTTTTTGTCTAACCAGGATTCGTTCGAAGTTGATACTGGCATCCGATTCATCCAGTACGCGGGCCTTGCGTGGTCTGTCGTTGACCTCGTTCCGTCT ATTTTCTCATACCTCGGATTGTAG
AA sequence Show only first row Show all	>Lus10000850 pacid=23141938 polypeptide=Lus10000850 locus=Lus10000850.g ID=Lus10000850.BGIv1.0 annot-version=v1.0 MESIALWQASALCGIASWIAFSPCFNVTHKLRSLLQPWVSRHVAAGTPAVLRIQKYQHKYLDALFSGLSCVVSVPFYTAFLPFLFWSGHGKLARQMTLLM AFCDYSGNCIKDVVSAPRPSSPPVRRVTATKDEEDNALEYGLPSSHTLNTVCLSGYLLCYVLSYMQNQDLSLTMAGVAMVCLLVGLTGWGRIYLGMHSLI DIIAGLVFGILILAFWLTVHDRIDSFIVSGQNVTTFWATLSFLLLFAYPTPEFPTPSFEFHTAFDGVAFGIVAGIQQTYHQFHHETVPRICTPELPIQAF LGRVAVGIPTILLVKFCSKALAKWILPVVSNTLGIPIRSTTYIPVLNAAGKKPVKQQQQSGGYIQKLFFLSNQDSFEVDTGIRFIQYAGLAWSVVDLVPS IFSYLGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58490		AtSPP1	sphingoid phosphate phosphatas...		Lus10000850 [exp]	0	1
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10016102 [exp]	8.0	0.6379
AT3G58670			Protein of unknown function (D...		Lus10020711 [exp]	8.2	0.6641
AT3G54620	bZIP	BZO2H4, ATBZIP2...	BASIC LEUCINE ZIPPER O2 HOMOLO...		Lus10018759 [exp]	16.1	0.6151
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Lus10000555 [exp]	20.3	0.6313
AT3G12570		FYD	FYD (.1.2.3.4)		Lus10023420 [exp]	21.8	0.6145
AT3G53390			Transducin/WD40 repeat-like su...		Lus10000150 [exp]	26.3	0.6232
AT5G65000			Nucleotide-sugar transporter f...		Lus10026182 [exp]	26.6	0.6356
					Lus10024490 [exp]	28.0	0.6374
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10028100 [exp]	33.6	0.5701
					Lus10024103 [exp]	34.8	0.6317

Compare expression of checked genes

Lus10000850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.