Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11980 407 / 3e-135 FAR2, MS2 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) AT5G22500 302 / 4e-96 FAR1 fatty acid reductase 1 (.1) AT3G56700 298 / 7e-94 AtFAR6, FAR6 fatty acid reductase 6 (.1) AT3G44540 292 / 3e-92 FAR4 fatty acid reductase 4 (.1.2) AT3G44550 290 / 3e-91 FAR5 fatty acid reductase 5 (.1) AT3G44560 279 / 5e-87 FAR8 fatty acid reductase 8 (.1) AT4G33790 260 / 6e-80 G7, FAR3, CER4 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) AT5G22420 177 / 1e-49 FAR7 fatty acid reductase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029336 [exp] 428 / 6e-143 AT3G11980 753 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10016208 [exp] 424 / 2e-141 AT3G11980 749 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10015974 [exp] 419 / 4e-140 AT3G11980 735 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10006264 [exp] 293 / 3e-92 AT4G33790 624 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10020584 [exp] 289 / 5e-91 AT4G33790 627 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10036824 [exp] 239 / 1e-71 AT3G44540 461 / 6e-159 fatty acid reductase 4 (.1.2) Lus10019187 [exp] 231 / 2e-68 AT3G44540 444 / 4e-152 fatty acid reductase 4 (.1.2) Lus10000852 [exp] 117 / 1e-28 AT3G11980 181 / 9e-52 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10036821 [exp] 92 / 3e-21 AT3G44540 143 / 5e-41 fatty acid reductase 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G062200 [exp] 434 / 8e-146 AT3G11980 754 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.006G196500 [exp] 392 / 2e-129 AT3G11980 699 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.016G031600 [exp] 373 / 2e-123 AT3G11980 503 / 9e-174 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.004G185000 [exp] 295 / 3e-93 AT4G33790 588 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.019G075201 [exp] 295 / 4e-93 AT3G44540 515 / 1e-180 fatty acid reductase 4 (.1.2) Potri.009G144900 [exp] 294 / 6e-93 AT4G33790 618 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.009G145000 [exp] 283 / 1e-88 AT4G33790 578 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.004G185100 [exp] 280 / 2e-87 AT4G33790 594 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.009G145100 [exp] 51 / 6e-08 AT3G44540 79 / 1e-18 fatty acid reductase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07993 [flax] [poplar] NAD_binding_4 Male sterility protein CL0063 [flax] [poplar] PF03015 [flax] [poplar] Sterile Male sterility protein
Representative CDS sequence Show only first row Show all	>Lus10000851 pacid=23141940 polypeptide=Lus10000851 locus=Lus10000851.g ID=Lus10000851.BGIv1.0 annot-version=v1.0 ATGTATTCTGCAGCTTCATTCGCCAGACAAAATCCCTTGGGGGACAGATCTTCACACATCCATCTATGGCGGCCGCAATCGAGCAGCAGACCAAGCAGTT GCTTCATTACTCGACTAGCTTATAAAAATGATAATAATAATAAACCTCGTCATCATCAAGTTAGAAATGGAGCAATCAATCTTAACAAGGATCAGGAGGC TGCCACGAAGAAGAATGTACTAGTTCCAGATCCTCATGATGATGAGCTGATGATGAACATCGTCAACAGTACTAGTTCGAAGACGCTGCAGGATGGTCTC GGAATCGAGAGCTTCCTGAGTGGGAAGACCTGGCTCATCACTGGCGCAACTGGCTTCGTCGGTAAAGTACTGTTGGAGAAGATACTGCGGTCGATTCCAG ACACTAGGAAGATCTATGTGCTGATTAAGGCTAGAGACAATGAAGATGCTCTACGTAGGCTTAAAACTGAGATACTTGAAGCAGATTTATTCCAAGTTTT GAGAGTACTGCATGGAAAATCCTATAACAAGTTCATGATGAGTAAGTTGGTTCCAGTGGCCGGAAATTTGACTCAAGGTTCTGAACTCGGGATGGATTCT CAAACTGTCAGTTTGGTCGCTGGAGAGATCGATCTAATGGTCAACTCCGCCGCCAACACAACCTTCGACGAAAGGTATGATGTCGCAATTAATACAAACA CCAAAGGAGCCATCCACCTTATGGGATTTGCCGACAAGTGCAAGAACCTCAAGCTGTTTTTGCAAGTTTCGACAATTTATGCAAACGGAGGAAGACAGGG GAGAGTAACGGAGAAGCCCTTCATCAACGGCGAAACCACCTTACCAAGTAACGGCGCTGTTTCGTTGCCATTGACGGTACTGGACGTTGCAGCTGAAATT GAATTGGCCTTAACTCATCATCACGGTACCGGCACCAACGAATCCGACGAATTGAAAAATTTAGGGTTTCAGAGGGCCAAAAGGTTTGGGTGGCGGGACA CCTACACCTTCACTAAAGCGATGGGAGAAATGATGATCGGAGAATGCGCATCGGAGTCGAAAGTGCCGGTGGTGGTAGTTCGACCGAGTATCATCGAGAG TACTTATGCCGATCCATTTCCAGGTTGGATCGAAGGCAACAGGATGTTGGATCCAATCGCGCAAAATTACTGTAAAGGTCGGATGACGAGCTTTCCCGGA GACCCCAACTCGATCATGGACGTGGTCCCAGTTGACATGGTGGTCAACGTGATATTGGCAGCCGCAACTCGCCACGGCGCCGCTAGTACTTTGGTCGTCA ATAACGGTCATCATACGAATACTGTGAACGTGTACCAAATCGGTTCTTCCGTTTCCAATCCGATGACTCTAAGCCAACTGTTCATGTTTTACTACATTCA CTTTCGAGATTCTCCGGTTCTCGTCCATGGCAGATCCCTCCGGGTCACAGGACCACTTGATATATGCAGCTCCCTCCAAGAATTCTCCTCCGGACTCTGC ATCCCAGCCGGCAAAAGCTCCGGTGAAAAGATGCGGCAGGTGGCCATCCGTATGGCTACGTTGTACAAGCCCTACATGTCCTTTATGGGAAGATATGACT GTAGCAACACGGAGAAGCTGATGGAGGAGATGTCGGAGGAAGAAAAGGAGAAGTTTGGGTTTGATGTCACTCGAATCGACTGGCAACGTTACATTGCAGA GGTTCACATCCCTGGTCTCAGGAAACATGTCATGAAGGAGATGGTTCTGGCAGATGTACTCTATTAG
AA sequence Show only first row Show all	>Lus10000851 pacid=23141940 polypeptide=Lus10000851 locus=Lus10000851.g ID=Lus10000851.BGIv1.0 annot-version=v1.0 MYSAASFARQNPLGDRSSHIHLWRPQSSSRPSSCFITRLAYKNDNNNKPRHHQVRNGAINLNKDQEAATKKNVLVPDPHDDELMMNIVNSTSSKTLQDGL GIESFLSGKTWLITGATGFVGKVLLEKILRSIPDTRKIYVLIKARDNEDALRRLKTEILEADLFQVLRVLHGKSYNKFMMSKLVPVAGNLTQGSELGMDS QTVSLVAGEIDLMVNSAANTTFDERYDVAINTNTKGAIHLMGFADKCKNLKLFLQVSTIYANGGRQGRVTEKPFINGETTLPSNGAVSLPLTVLDVAAEI ELALTHHHGTGTNESDELKNLGFQRAKRFGWRDTYTFTKAMGEMMIGECASESKVPVVVVRPSIIESTYADPFPGWIEGNRMLDPIAQNYCKGRMTSFPG DPNSIMDVVPVDMVVNVILAAATRHGAASTLVVNNGHHTNTVNVYQIGSSVSNPMTLSQLFMFYYIHFRDSPVLVHGRSLRVTGPLDICSSLQEFSSGLC IPAGKSSGEKMRQVAIRMATLYKPYMSFMGRYDCSNTEKLMEEMSEEEKEKFGFDVTRIDWQRYIAEVHIPGLRKHVMKEMVLADVLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10000851 [exp]	0	1
AT2G29340			NAD-dependent epimerase/dehydr...		Lus10004985 [exp]	1.7	0.9723
AT4G24910			Protein of unknown function (D...		Lus10002345 [exp]	5.1	0.9626
AT1G05420	OFP	ATOFP12, OFP12	ARABIDOPSIS THALIANA OVATE FAM...		Lus10014677 [exp]	6.9	0.9579
AT4G24910			Protein of unknown function (D...		Lus10003160 [exp]	7.5	0.9584
AT4G23610			Late embryogenesis abundant (L...		Lus10027179 [exp]	8.4	0.9569
AT3G54450			Major facilitator superfamily ...		Lus10039521 [exp]	8.8	0.9546
AT2G37870			Bifunctional inhibitor/lipid-t...		Lus10031925 [exp]	9.4	0.9520
AT4G23610			Late embryogenesis abundant (L...		Lus10039662 [exp]	10.0	0.9497
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10035975 [exp]	10.8	0.9515
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Lus10031530 [exp]	11.2	0.9081

Compare expression of checked genes

Lus10000851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.