Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11980 165 / 1e-45 FAR2, MS2 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) AT3G15351 120 / 2e-33 unknown protein AT3G56700 91 / 6e-20 AtFAR6, FAR6 fatty acid reductase 6 (.1) AT4G33790 67 / 5e-12 G7, FAR3, CER4 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) AT3G44550 65 / 2e-11 FAR5 fatty acid reductase 5 (.1) AT3G44540 65 / 3e-11 FAR4 fatty acid reductase 4 (.1.2) AT5G22500 64 / 4e-11 FAR1 fatty acid reductase 1 (.1) AT3G44560 62 / 2e-10 FAR8 fatty acid reductase 8 (.1) AT5G22420 44 / 0.0002 FAR7 fatty acid reductase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015974 [exp] 278 / 1e-88 AT3G11980 735 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10029336 [exp] 212 / 6e-63 AT3G11980 753 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10016208 [exp] 211 / 3e-62 AT3G11980 749 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10015973 [exp] 179 / 3e-55 AT3G15351 228 / 1e-77 unknown protein Lus10000851 [exp] 103 / 6e-24 AT3G11980 459 / 2e-155 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10006264 [exp] 58 / 6e-09 AT4G33790 624 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10020584 [exp] 57 / 8e-09 AT4G33790 627 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10019187 [exp] 56 / 2e-08 AT3G44540 444 / 4e-152 fatty acid reductase 4 (.1.2) Lus10036824 [exp] 54 / 1e-07 AT3G44540 461 / 6e-159 fatty acid reductase 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G062200 [exp] 188 / 3e-54 AT3G11980 754 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.006G196500 [exp] 182 / 4e-52 AT3G11980 699 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.002G142100 [exp] 131 / 9e-37 AT3G15351 187 / 1e-61 unknown protein Potri.002G142000 [exp] 131 / 9e-37 AT3G15351 189 / 4e-62 unknown protein Potri.016G031600 [exp] 114 / 6e-28 AT3G11980 503 / 9e-174 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.009G144900 [exp] 67 / 4e-12 AT4G33790 618 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.004G185100 [exp] 67 / 7e-12 AT4G33790 594 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.019G075201 [exp] 67 / 7e-12 AT3G44540 515 / 1e-180 fatty acid reductase 4 (.1.2) Potri.004G185000 [exp] 66 / 1e-11 AT4G33790 588 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.009G145000 [exp] 59 / 2e-09 AT4G33790 578 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07993 [flax] [poplar] NAD_binding_4 Male sterility protein
Representative CDS sequence Show only first row Show all	>Lus10000852 pacid=23141943 polypeptide=Lus10000852 locus=Lus10000852.g ID=Lus10000852.BGIv1.0 annot-version=v1.0 ATGGATGAGAATATGAAGCTGTTCCAAGAAAGATTGCTCGAGCTTGAAACTGAAGGAGAGCAGTTGCTTCTAGCAAGACATCAGACGGTAGAAAATGACA GGCTAAGGAATGGGAACAGGGAAGCGCTTACAGCACTAAGGAAGAGAGCTAGAACAACCAAAACTAGTGTCGCATCTCCTTTCGAGTCGATAATGAAGGA TTTCGGACGGTCTGGATCAAGCCCCTTGGTGAAGGAGGTCTGCACAACGTGTGGCGACCATGACTCGGAAGAGCCAACATGGATGATGTTCCCCGGAGCC AATGTTTTCTCTAGCGTTCCTTTTCACGCTGCTCATACCATTTTGGAGACAGAACTGTTCAAGTTCCTCCGGCTTACCTATGGAAAATCATACGAGACTA TCATGTTGAGCAAATTAGTTCCGGTGGTTGGAAATGTCTGTGAATCTGGTCTTGGGTTGGAACAAGAATTGGCAGATTTGATCGCTGATGATGTTGATGT GATTGTGAATTCAGCGGCCAATACAACTTTTGATGAAAGATATGATGTGGCCATCGACATTAACACACGCGGACCTTACAACCTCATGGTTTCGCTAAGA GCATATGTGAATGGACAAAGACAAGGAAGAATCACGGAGAGGGCATTCGGTGTAGGAGATTGCATAGCTAGGGAGAACAACTGTAATCTTGCCCGTGAAG CTACATCAAGATTTACATTGGACATTGACGACGAAGTGAGGCTTGTGCAGGACTCCAAGGAGGCGTTTCACCGAGACAAAATGGACAATAAGATGAAAGA GCTCGGATTGGAAAGGATGATGGACCCTATAGTTCTATGCTATGGGAAAGGGCAGCTTACAGGATTTCTTGTGGATCCAAATGGAGTCTTGACGTGGCCA ATTGCTGTCCTGCTGATGAAACTCTTCAGGAACATGGATGATTTCTCTGATCATCTTTGGAGAGAAGTGATTCAGAGAAATGGGTTGACAGCTGATGGGA AATTGTCTCAGAAACACGAATTCATATGCCGGAAATCGGTGGAACAAGCTAAGTACTTGGCAAACATCTACGAGCCATACACATTCTACAGCGGAAGGTA A
AA sequence Show only first row Show all	>Lus10000852 pacid=23141943 polypeptide=Lus10000852 locus=Lus10000852.g ID=Lus10000852.BGIv1.0 annot-version=v1.0 MDENMKLFQERLLELETEGEQLLLARHQTVENDRLRNGNREALTALRKRARTTKTSVASPFESIMKDFGRSGSSPLVKEVCTTCGDHDSEEPTWMMFPGA NVFSSVPFHAAHTILETELFKFLRLTYGKSYETIMLSKLVPVVGNVCESGLGLEQELADLIADDVDVIVNSAANTTFDERYDVAIDINTRGPYNLMVSLR AYVNGQRQGRITERAFGVGDCIARENNCNLAREATSRFTLDIDDEVRLVQDSKEAFHRDKMDNKMKELGLERMMDPIVLCYGKGQLTGFLVDPNGVLTWP IAVLLMKLFRNMDDFSDHLWREVIQRNGLTADGKLSQKHEFICRKSVEQAKYLANIYEPYTFYSGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10000852 [exp]	0	1
					Lus10010387 [exp]	3.9	0.6731
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015752 [exp]	6.3	0.6851
AT1G66510			AAR2 protein family (.1.2.3)		Lus10028528 [exp]	9.1	0.7174
AT2G02880			mucin-related (.1)		Lus10030486 [exp]	15.6	0.7032
AT3G29130			unknown protein		Lus10038450 [exp]	17.1	0.6931
AT5G42560			Abscisic acid-responsive (TB2/...		Lus10024332 [exp]	20.5	0.6101
AT5G61310			Cytochrome c oxidase subunit V...		Lus10040012 [exp]	21.8	0.6716
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Lus10026854 [exp]	22.7	0.7014
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10042805 [exp]	25.0	0.6788
AT1G32210		ATDAD1	DEFENDER AGAINST APOPTOTIC DEA...		Lus10010413 [exp]	26.0	0.7004

Compare expression of checked genes

Lus10000852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.