Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21610 392 / 4e-126 wound-responsive family protein (.1.2.3) AT1G77310 377 / 3e-120 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028676 [exp] 1182 / 0 AT1G21610 486 / 3e-163 wound-responsive family protein (.1.2.3) Lus10028666 [exp] 547 / 0 AT1G77310 261 / 3e-78 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G182300 [exp] 694 / 0 AT1G21610 449 / 3e-148 wound-responsive family protein (.1.2.3) Potri.002G078800 [exp] 665 / 0 AT1G77310 417 / 4e-135 unknown protein Potri.005G067800 [exp] 363 / 9e-115 AT1G77310 321 / 5e-99 unknown protein Potri.007G101201 [exp] 311 / 3e-95 AT1G21610 286 / 2e-86 wound-responsive family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000853 pacid=23173570 polypeptide=Lus10000853 locus=Lus10000853.g ID=Lus10000853.BGIv1.0 annot-version=v1.0 ATGGCGGAGGAGCGGGGCGGCGGCGGCGGAGGATTAGGAGGAGGGGGAGTAGAGTCGTCGTCTTCGAGGACGACGCCGTCTTACGTCAAATCAGGTGACC GGCAGGTTTTCTCGGGGGGGGTCGACCGGCAGTTATTCACGGTGGAGCTCCGGCCGGGGGAGACGACATTCGTGTCGTGGAAGAAGCTGGTGAAGGATGC CGATAGGAATTGCGGTGGATCTAAGCCGGTTTTGGACCCTCCTCCTCCTGCCAACGCTCACCCCAACCTCGAGTCTCGTATTGCTCCTGGTGGTCAGCAG ACAGAAAATGAAGAGAAGGACGATGCTCCTCATCGTTTCAGTGCCGTGATTGAGAAGATTGAACGTCTCTACATGGGGAAGGATAGTAGTGATGACGAAG ACTTGAAAGATGCCCCTGATGATGATCAGTATGATACAGAAGATTCTTTTATTGATGATGCGGAGCTGGATGAGTATTTTGAAGTCGACAATTCCGCCAT AAAGCATGATGGGTTCTTTGTCAACAGGGGAAAGCTTGAACGCATAAGTGAGCCTGCTGCCATTCCTGACAAGCAACCAAAGAAAAGGAGGAGGAAAGAT TCAACAAAGGCTCATGGTGATAGTGAAAACACTAATGTGTCTAATAAACATGTTAAGACTGGAAAATCAACCACTGGAAAGTCTGTGCAATCAGTAGCAA AGCGTTCTTCTGGGCCTTCTCAGAATTCGACTATGGAAGTTGATTATTATGAAGATGGGCAGTCTCATAACCCGTTGAATTTATGTGGAACATCTACCAA GAAGATGTCAAATGGTGATGCTTCCGCATCATTAGTAGAAGGGAAAGATTTTCAAATGCAAGAGCCTGGAATTCTCCAAGGAAATAACTTCACAAATATA TCTAAACATCAGCTTCATGACAAAAGTGCTTATGGACAAAATAAGCTGCAATCTGCAAGGCCTCTTAGAAATGTTGAAGAACCTGAATCATCAACTCGAG CAAAAGAAAGAAATGGCGTCAGATTGCTGCCTGACCTTAATAATGTGCCTGATGGAAAGATATCTGTGCATACAACAGCAATACACGTCCACAAAAGGGA GGGTTCTAGTGTCAAGCCTAAAGGTTCAATGTTAGAAAAAACCATCAGGGAGCTGGAAAAAATGGTTGCTGAATCAAGGCCACCTGCGATTGACAATCAA GAAGCTGATCCATCACAAGCAATTAAAAGAAGACTGCCTAGGGAAATCAAGCTGAAGCTAGCCAAAGTTGCTAGACTCGCGGCAAGCCAGGGGAAAATGT CAAAGGATCTAATCAATCGCCTTATGAGTTCTCTGGGACACTTAATACAACTTAGAACACTGAAGAGAAACTTGAGAATCATGGTAAACACAGGGTTGTC AGCACAACAGGAGAAAGATGATAATTTCCAGATGATAAAAAAGGACGTTGCTGAGATGATCAAGACTCGTGTCCCGGCGTTGGAGTCCAAGTGTGTTAGA TTAGGCTATTATCTCGATAAATGGATGTTACGATTACTTATTCCTCTATGGCATTTGAATGATCTCTATGTCATCAAGGATTTAGAGCAGCAAGCTGGAG CTTCTGATGGTTTTCAAGAACATGATCCAGAGAACAAATCGGTGAAACGCAAATTTAGCATGGAAGCTGAGTTAGAGGACAAGATTTGCGACCTTTATGA CCTTTTTGTTGATGGATTGGATGAAGATGCAGGTCCACATGTCAGAAAGTTATATGTCGAGCTTGCAGGACTGTGGCCAATTGGCACTATGGACAACCAT GGGATCAAAAGAGCAATATGCAGGGCAAAAGATCGACGGAGGGCTCTGTACAGCAAAAATAAGGAGGACGAGAAAATCCAAAGGAAGAAAATGCTGTCAT CATCAAAGCCAGAAGAAGCTTTCCAAGCTGATCCAAACTCCGCTTCGCAGCATTTCCGTGAAAGATTAACTAGCGACGTGACTGGTCCGGTGTTGGCCTT GGCTAGCGTGCCAATATCCAGTCCAACCGCAATTCCCCAGGGATCCAGTATCCCGGCGAAAGGAAGTTCGGGAATTTTCATCCAAGAAGTTAAGACAGAA GGCGAAGTCGTGCTGGTCAAGAAGATGGCGAAGAAGAGAAAGCCCGAAGCAGCCGAACTAGACCAAGCTCATTTCCGCTCGCAATCGAGCGAGGAGCGAT ACAAGTCTGTCATTCCCCAGAAACTACACCTTCACCAAACCGGCAGTTTCGAGCAATCCAGCTGA
AA sequence Show only first row Show all	>Lus10000853 pacid=23173570 polypeptide=Lus10000853 locus=Lus10000853.g ID=Lus10000853.BGIv1.0 annot-version=v1.0 MAEERGGGGGGLGGGGVESSSSRTTPSYVKSGDRQVFSGGVDRQLFTVELRPGETTFVSWKKLVKDADRNCGGSKPVLDPPPPANAHPNLESRIAPGGQQ TENEEKDDAPHRFSAVIEKIERLYMGKDSSDDEDLKDAPDDDQYDTEDSFIDDAELDEYFEVDNSAIKHDGFFVNRGKLERISEPAAIPDKQPKKRRRKD STKAHGDSENTNVSNKHVKTGKSTTGKSVQSVAKRSSGPSQNSTMEVDYYEDGQSHNPLNLCGTSTKKMSNGDASASLVEGKDFQMQEPGILQGNNFTNI SKHQLHDKSAYGQNKLQSARPLRNVEEPESSTRAKERNGVRLLPDLNNVPDGKISVHTTAIHVHKREGSSVKPKGSMLEKTIRELEKMVAESRPPAIDNQ EADPSQAIKRRLPREIKLKLAKVARLAASQGKMSKDLINRLMSSLGHLIQLRTLKRNLRIMVNTGLSAQQEKDDNFQMIKKDVAEMIKTRVPALESKCVR LGYYLDKWMLRLLIPLWHLNDLYVIKDLEQQAGASDGFQEHDPENKSVKRKFSMEAELEDKICDLYDLFVDGLDEDAGPHVRKLYVELAGLWPIGTMDNH GIKRAICRAKDRRRALYSKNKEDEKIQRKKMLSSSKPEEAFQADPNSASQHFRERLTSDVTGPVLALASVPISSPTAIPQGSSIPAKGSSGIFIQEVKTE GEVVLVKKMAKKRKPEAAELDQAHFRSQSSEERYKSVIPQKLHLHQTGSFEQSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21610			wound-responsive family protei...		Lus10000853 [exp]	0	1
AT3G06670			binding (.1.2)		Lus10037742 [exp]	3.2	0.8715
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Lus10038994 [exp]	4.6	0.8126
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10033321 [exp]	11.8	0.8373
AT2G36720			Acyl-CoA N-acyltransferase wit...		Lus10035553 [exp]	13.7	0.8057
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10004142 [exp]	13.9	0.8128
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Lus10000873 [exp]	14.4	0.8244
AT1G21610			wound-responsive family protei...		Lus10028676 [exp]	22.0	0.8095
AT5G58410			HEAT/U-box domain-containing p...		Lus10042236 [exp]	22.4	0.7935
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10033319 [exp]	22.7	0.8183
AT3G10650		AtNUP1	unknown protein		Lus10028861 [exp]	25.1	0.7927

Compare expression of checked genes

Lus10000853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.