Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77320 791 / 0 MEI1 meiosis defective 1, transcription coactivators (.1.2) AT5G38260 89 / 7e-18 Protein kinase superfamily protein (.1) AT4G18250 89 / 1e-17 receptor serine/threonine kinase, putative (.1) AT5G39030 86 / 6e-17 Protein kinase superfamily protein (.1) AT5G39020 86 / 1e-16 Malectin/receptor-like protein kinase family protein (.1) AT1G70250 85 / 2e-16 receptor serine/threonine kinase, putative (.1) AT5G38250 84 / 2e-16 Protein kinase family protein (.1) AT1G66920 82 / 1e-15 Protein kinase superfamily protein (.1.2) AT5G38280 82 / 2e-15 PR5K PR5-like receptor kinase (.1) AT1G66910 81 / 2e-15 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028677 [exp] 1510 / 0 AT1G21640 1112 / 0.0 NAD kinase 2 (.1.2) Lus10028674 [exp] 256 / 3e-79 AT1G77320 209 / 6e-63 meiosis defective 1, transcription coactivators (.1.2) Lus10028668 [exp] 200 / 2e-58 AT1G77320 139 / 3e-38 meiosis defective 1, transcription coactivators (.1.2) Lus10013472 [exp] 192 / 5e-55 AT5G38280 177 / 2e-51 PR5-like receptor kinase (.1) Lus10028669 [exp] 185 / 8e-54 AT5G38260 97 / 1e-23 Protein kinase superfamily protein (.1) Lus10007934 [exp] 185 / 4e-49 AT5G38260 273 / 3e-83 Protein kinase superfamily protein (.1) Lus10025549 [exp] 96 / 1e-21 AT1G66980 209 / 1e-62 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025545 [exp] 97 / 2e-21 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10022359 [exp] 99 / 4e-21 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G182500 [exp] 1033 / 0 AT1G77320 1011 / 0.0 meiosis defective 1, transcription coactivators (.1.2) Potri.008G125500 [exp] 113 / 1e-25 AT1G67000 309 / 3e-94 Protein kinase superfamily protein (.1) Potri.010G118300 [exp] 100 / 1e-21 AT1G66920 316 / 1e-99 Protein kinase superfamily protein (.1.2) Potri.015G018000 [exp] 100 / 2e-21 AT1G66920 355 / 2e-114 Protein kinase superfamily protein (.1.2) Potri.012G003200 [exp] 96 / 2e-21 AT1G66920 280 / 2e-90 Protein kinase superfamily protein (.1.2) Potri.015G018200 [exp] 98 / 1e-20 AT1G66920 368 / 1e-119 Protein kinase superfamily protein (.1.2) Potri.007G125100 [exp] 97 / 1e-20 AT1G66920 347 / 2e-113 Protein kinase superfamily protein (.1.2) Potri.012G003500 [exp] 97 / 2e-20 AT1G66920 358 / 4e-116 Protein kinase superfamily protein (.1.2) Potri.012G003000 [exp] 97 / 2e-20 AT1G66920 356 / 5e-115 Protein kinase superfamily protein (.1.2) Potri.012G002800 [exp] 96 / 3e-20 AT1G66920 346 / 2e-111 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [flax] [poplar] BRCT-like PF00533 [flax] [poplar] BRCT BRCA1 C Terminus (BRCT) domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10000854 pacid=23173571 polypeptide=Lus10000854 locus=Lus10000854.g ID=Lus10000854.BGIv1.0 annot-version=v1.0 ATGATGAAGACGAACACGTTCAAAGGCACCAATGTGTTCATGTCCAGGAAACTAGTCCCGCCGGAGATCTACGACGCACTGCTCGACGCACTCAAGCTCA ACGGCGCCGAAGTCTTCCCTTGCTCCGACCCTTCCCGCAACTCTCCCAACGATTACCACGTCATCTCGTCTCCCGATCACGAGAAGTTTGAGGATCTTAG AGCTAAGGGATGCAATCTGCTAGGTCCGCAGTGTGTTCTTTCATGTGCCAAAGAACACAAACAATTCCCTAAGCAAAGTTTCACTTGTTGCCTTGCAATG GATGGTGTTAAGATACTAGCATCAGGCTTCGACATGGATGAGAAGGTTAAGCTTGAAAAGTCGGTTAAAGGGATGGGAGGACTTCTTTGTTCTAAGCCGA CTATGGATGTTAGTTTCGTCATTGTGAAGGATGTATTAGCTGCCAAGTACAAGTGGGCTTTGGATATTCTGAAGAAACCAATTCTCGCTGCAAGTTGGCT GTACCAGTGCTCGATTGAGCATCGCGTTGTTCCCCACGAGTCATATAGGGTTCTTCCTTTTTCTGGATTGACAATCTGCGTAACTGGAATTACAGGAGCT CCTACGGGTGACAAATTCAAAACTGCTCTTAGATGGGGTGATATTAACATCGTTTCTCGGAAATGGCTTGATCAGTCCATTGCTAGAAGAGCATGTCTTA ATGAGGAGTCCTATCCTGTTCATGGTGGTTCTGCACCACCTACCGTGAGAGTCCGTTCTTTGCTGGGTTCACAATATAGCCACAAGAAGAGTGCAGCACA GTCAGTATCTGGGCAACCATCAGCAGCTGTAGAATCAAGCTCGGCTACTTCTTGTCAATCTATTGGTTTAGCTGATTCGGATGTAGAAGCAACTCTCTCG CAGAACATGTCTTCTATGTTTTATGATGCTTCCATCTACATGAAAAAGGACGACAAGGAGGCTCCTGCACCACAGCCGACAAATGAAACAAGCTTTAGCA ATTGTGTTGCTAATGATTCTCAATCTGAAGACAATGATTTGTACTTGGCTGACTGTAGGATATCACTTATTGGTTTTGGAGCTTCTGAATTACGTAAATT AGTTAACATGGTGCGCAATGGCGGGGGCTCCCGGTACATGGCACTCAATGACAAACTGACACATATTATAATTGGAGTCCCAACAGAGGACGAGAAAAAA GAACTAAGGAGCCTTGCTGCTTCAGGGGTCATTAATGTGGTTAGCACAACATGGCTTGAAGATTGTGGTCGAGAAAGGAGAGAAATTCCCGTTCGAGCCC AGCATATGGCATACGATTTACTTCGTCCAAAAGATTCTTTGAACTTCAAGAAAGGACCCCTCAACGGCATAAGGAAATCTTCTATTCCTGGTGTACCTTC TGATCAGTTGAATGTAGAATCTGGCAGGCCAGAGGTACATTCTCATCAGTTAATGGGACGTTTAGATTCTCTCAGGACAGCAGGATTACCAACTGAGCAG AAAAAAGAGGAAAAACAAGAAAACCATGTCGATGGAGTCCTGAATCCAAATGCAACCTCGACACAGATTCAGAAAAATACATTTCCCTTTGATAACATTC AAAAGAAGGACGGGCAGAGTATTCACCATGGTTCCGATGACGCAAAGTCTCAAAGCTGGAAACCGGCAGCTGTATTTGTGGGAAAAACCTTCTGCTTTTC TATGGCGTTTCCTGCCGACAGGAGAACTGAGATTGTCGAATGGATCGCCCAAGGTGGTGGGGAATTAATTGACGATGGAACTATACAGAATGTGCAATTC ACGGTTGAATGCCATGGTGTCATTACCTCTTCTTCAACCCATACTTGTTTTGTTTCTAGTCACTGGGTTCGGTCTTGTTTAGAGGATAGAAAATTGCTGG ACGTCAGCAGTCATCTTCTGTATTCACCACTTCCCTGCCAGATTCCTTTTCTTGGGTTTGGAACCTTTCGGCTCTGCGTATCCCAATATGACGACAAAGA GAAGTCGTTGTTAAGAAACTTGTGCTTTGTTCTTGGAGCCAAATTCGTAGAGAAGTTGACGAAGAAGGTTACTCACTTACTCTGCAAGTTTAGGCATGGA CCCAAGTATGATTTTGCTTGCAAATGGGGGATAACTGCAGTTACATCAGAGTGGATCTATGAGTGCGTCAGACAGGATAAACTTGTCAATTCGGCTTCGT TTGAACCAAAAGAAATGACTCAGCAGGACCAGGAAGATGGCTTATGCGCTGTGAGCCAATTCCCTTCTCAATCTGTTTGGAAGGTACCTGGAGAACTTTC ATCGCAGTTGAGAAGCCAGTCCCAAGTCGTCACTAATCTCCAGCAGCTTCCAATTCCTAAGAAAACCATCAGCAGTATGCTAGGTGCCCGAGAATTCATT CATCCTTCGAAAAGGCCAAGAAATGTTCAACCCGATGAGCAAACCAGCCTTTCTTCTTCTGGTGTTTATTCAACGAAAGACTCCACAGATACTTCACATA CCGTTCCTGATGTGGCCGCTCTCGAATATTTGCTGGAGCAAACAAGCAAAATTCATGACCATAGCTCCCCCGTTCGGACCGGTTTGGACAAGAGCATTTT ACCCCCTCCCGAAAGCACAATACTCGACGAAGACCGTGGTGGAACATCTTCTGCCAGTGGTTTACCAAACGATTGGTTGAACAGTAACGGCAAGCGGAAG GACGAGTCCAATGAATCCTTACAAGACACGGACAAAGGACTGTACTACGGTTTCAGTGAAACGCAGACAGAGTCCCAGGTTGTTGGCTACGAAGAGGACC TAACCGGTCGACAGATGCTTATCGATAGACTGGGAGCAGCTCGATCGGATCTAGGGACGGCTCGAGCCATCTGCCATGTGCATGATGTCTCGTCGGTTCT TCATCTAGAAATCAATCCTCGAAATGTCCTGTTGGACAGTGATTTCACTCAGAAAATTGCAGATTTCGGCCTAGCCAAGTTCTGTAGTCGCGATCGCCTC TCCGGACGGTACTTTGCACTGGCAGTGTTCTCGGATGACATCGAGGCCATTTCGAGCAAATCGGACGTCTATAGCTTCGGAATGTTGTTGCTAGGAATGG TCGAATCGAAGAGCAAGTGCTCTTCGCAAGTGTACTTTCCGATGTGGGTTCACGACCATTTGAGCAACAGAGGAGGCTAG
AA sequence Show only first row Show all	>Lus10000854 pacid=23173571 polypeptide=Lus10000854 locus=Lus10000854.g ID=Lus10000854.BGIv1.0 annot-version=v1.0 MMKTNTFKGTNVFMSRKLVPPEIYDALLDALKLNGAEVFPCSDPSRNSPNDYHVISSPDHEKFEDLRAKGCNLLGPQCVLSCAKEHKQFPKQSFTCCLAM DGVKILASGFDMDEKVKLEKSVKGMGGLLCSKPTMDVSFVIVKDVLAAKYKWALDILKKPILAASWLYQCSIEHRVVPHESYRVLPFSGLTICVTGITGA PTGDKFKTALRWGDINIVSRKWLDQSIARRACLNEESYPVHGGSAPPTVRVRSLLGSQYSHKKSAAQSVSGQPSAAVESSSATSCQSIGLADSDVEATLS QNMSSMFYDASIYMKKDDKEAPAPQPTNETSFSNCVANDSQSEDNDLYLADCRISLIGFGASELRKLVNMVRNGGGSRYMALNDKLTHIIIGVPTEDEKK ELRSLAASGVINVVSTTWLEDCGRERREIPVRAQHMAYDLLRPKDSLNFKKGPLNGIRKSSIPGVPSDQLNVESGRPEVHSHQLMGRLDSLRTAGLPTEQ KKEEKQENHVDGVLNPNATSTQIQKNTFPFDNIQKKDGQSIHHGSDDAKSQSWKPAAVFVGKTFCFSMAFPADRRTEIVEWIAQGGGELIDDGTIQNVQF TVECHGVITSSSTHTCFVSSHWVRSCLEDRKLLDVSSHLLYSPLPCQIPFLGFGTFRLCVSQYDDKEKSLLRNLCFVLGAKFVEKLTKKVTHLLCKFRHG PKYDFACKWGITAVTSEWIYECVRQDKLVNSASFEPKEMTQQDQEDGLCAVSQFPSQSVWKVPGELSSQLRSQSQVVTNLQQLPIPKKTISSMLGAREFI HPSKRPRNVQPDEQTSLSSSGVYSTKDSTDTSHTVPDVAALEYLLEQTSKIHDHSSPVRTGLDKSILPPPESTILDEDRGGTSSASGLPNDWLNSNGKRK DESNESLQDTDKGLYYGFSETQTESQVVGYEEDLTGRQMLIDRLGAARSDLGTARAICHVHDVSSVLHLEINPRNVLLDSDFTQKIADFGLAKFCSRDRL SGRYFALAVFSDDIEAISSKSDVYSFGMLLLGMVESKSKCSSQVYFPMWVHDHLSNRGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77320		MEI1	meiosis defective 1, transcrip...		Lus10000854 [exp]	0	1
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10020813 [exp]	3.5	0.9558
AT5G02370			ATP binding microtubule motor ...		Lus10024395 [exp]	6.6	0.9519
AT5G25590			Protein of unknown function (D...		Lus10022116 [exp]	7.7	0.9441
AT5G63920		TOP3A, AtTOP3al...	topoisomerase 3alpha (.1)		Lus10004959 [exp]	8.5	0.9352
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10002857 [exp]	8.7	0.9479
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10019866 [exp]	13.2	0.9418
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10004038 [exp]	13.6	0.9462
AT4G21530		APC4	anaphase promoting complex 4, ...		Lus10011250 [exp]	13.9	0.9316
AT5G63960		EMB2780	DNA binding;nucleotide binding...		Lus10020862 [exp]	14.4	0.9362
AT1G20060			ATP binding microtubule motor ...		Lus10033133 [exp]	15.0	0.9396

Compare expression of checked genes

Lus10000854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.