Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20410 54 / 3e-09 RNA-binding ASCH domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028672 [exp] 178 / 1e-55 AT2G20410 309 / 1e-103 RNA-binding ASCH domain protein (.1) Lus10000969 [exp] 81 / 1e-18 AT1G21580 568 / 4e-167 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10028660 [exp] 81 / 2e-18 AT1G21580 583 / 5e-172 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10028671 [exp] 66 / 4e-13 AT4G36090 75 / 5e-14 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.2), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.3) Lus10042558 [exp] 52 / 9e-09 AT2G20410 306 / 4e-104 RNA-binding ASCH domain protein (.1) Lus10022016 [exp] 40 / 0.0001 AT2G20410 285 / 4e-96 RNA-binding ASCH domain protein (.1) Lus10006580 [exp] 0 / 1 AT2G20410 327 / 2e-111 RNA-binding ASCH domain protein (.1) Lus10014656 [exp] 0 / 1 AT2G20410 295 / 1e-95 RNA-binding ASCH domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G045800 [exp] 51 / 2e-08 AT2G20410 281 / 3e-95 RNA-binding ASCH domain protein (.1) Potri.019G017900 [exp] 51 / 3e-08 AT2G20410 288 / 2e-96 RNA-binding ASCH domain protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000855 pacid=23173569 polypeptide=Lus10000855 locus=Lus10000855.g ID=Lus10000855.BGIv1.0 annot-version=v1.0 ATGAATCATTCTGCGTACTATGAGTCTGATAACAAACCTAGAGGAAGAGGTAAAGAGAATTCTTATTCAGGACGAGGCACAAAAGATCAAGCTGGAGGTG GAACTCCTGTTGTTACACCTGATCTACCAGCCTCTGTGAGTTCGTCTGATGGAGGTTTGAATCCTTGGAAGAGTAAAGTTAGGAAACTGGACATTTCTGA TCGGAAGGATAGTTTGAGCCCCCACCCGATGAACTTCAACCCCTGCTTGACTATGCACCAACCTTGGGCTTCTCTGCTCGTCCACAGCATTAAACGGATC GAAGGCGATCCTGGCCGGCTCCCGTTCGCGAGTGTTTCAGGCATCGATGATGGAGGAAATCACAAAAACTGGATCGCTACAAGAATCCATGGCTTGAGTT GA
AA sequence Show only first row Show all	>Lus10000855 pacid=23173569 polypeptide=Lus10000855 locus=Lus10000855.g ID=Lus10000855.BGIv1.0 annot-version=v1.0 MNHSAYYESDNKPRGRGKENSYSGRGTKDQAGGGTPVVTPDLPASVSSSDGGLNPWKSKVRKLDISDRKDSLSPHPMNFNPCLTMHQPWASLLVHSIKRI EGDPGRLPFASVSGIDDGGNHKNWIATRIHGLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20410			RNA-binding ASCH domain protei...		Lus10000855 [exp]	0	1
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039426 [exp]	3.5	0.7369
AT4G01410			Late embryogenesis abundant (L...		Lus10012605 [exp]	5.8	0.7924
AT5G61730		ABCA9, ATATH11	ARABIDOPSIS THALIANA ABC2 HOMO...		Lus10042172 [exp]	9.8	0.6715
					Lus10011723 [exp]	16.9	0.7139
AT3G23880			F-box and associated interacti...		Lus10010910 [exp]	20.1	0.7077
					Lus10024552 [exp]	22.7	0.7076
					Lus10022573 [exp]	25.3	0.7074
					Lus10003840 [exp]	27.4	0.7074
					Lus10005396 [exp]	29.3	0.7074
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10001431 [exp]	31.0	0.7074

Compare expression of checked genes

Lus10000855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.