Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21640 1142 / 0 ATNADK2, NADK2, ATNADK-2 NAD kinase 2 (.1.2) AT3G21070 246 / 2e-71 NADK1, ATNADK-1 NAD kinase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028677 [exp] 1684 / 0 AT1G21640 1112 / 0.0 NAD kinase 2 (.1.2) Lus10029717 [exp] 1362 / 0 AT1G21640 1154 / 0.0 NAD kinase 2 (.1.2) Lus10003178 [exp] 250 / 3e-72 AT3G21070 768 / 0.0 NAD kinase 1 (.1.2) Lus10009958 [exp] 215 / 2e-60 AT3G21070 700 / 0.0 NAD kinase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G078700 [exp] 1258 / 0 AT1G21640 1191 / 0.0 NAD kinase 2 (.1.2) Potri.005G182600 [exp] 1207 / 0 AT1G21640 699 / 0.0 NAD kinase 2 (.1.2) Potri.001G256100 [exp] 246 / 4e-71 AT3G21070 774 / 0.0 NAD kinase 1 (.1.2) Potri.009G051500 [exp] 241 / 4e-69 AT3G21070 754 / 0.0 NAD kinase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [flax] [poplar] PFK PF01513 [flax] [poplar] NAD_kinase ATP-NAD kinase
Representative CDS sequence Show only first row Show all	>Lus10000856 pacid=23173568 polypeptide=Lus10000856 locus=Lus10000856.g ID=Lus10000856.BGIv1.0 annot-version=v1.0 ATGAGCCGATTGTCCTCTCCGGTCGTCGGAGCTTTCATTCTCTCTCCTCCTCCTCCTAACGGGGATGGTTGTTGTAAGTCGACGGTGGAGTTTCAGAGGA GGAGGAGGAGGAAATTTAGGTTCGTTGTCTCAGCGGAGTTTCCCAAGTCATTCTCCCTCGACTTGGGGTTCGATCACTCTCTGAATGATCAGTCTAATGA CCAATCACAGTCACCCTGGATCGGTCCGATTCCTGGGGATATCGCTGAAGTCGAGGCTTATTGCAGAATTTTCAGAGCAGCTGAACGGTTTCATACTGCA TTGATGAACACATTGTGCAACCCGGTCACTGGGGAATGTGGCGTTTCTTATGACTTCCCTCCGGAAGAAAGACCTGTGCTAGAACAGAAAATTGTATCCG TTCTTGGAGCTGTGCTGTCACTTCTTAACAAAGGGAGGAAAGATGTTCTCTCTGGACGGTCTTCTATCATGAGCTCATTTCGCATCTCAGACGTAAGCAC GATGGAGGATAAGCTTCCACCACTTGCGGTTTTCAGGAGTGAGATGAAAAGATGCTGTGAGAGTCTGCATGTTGCTCTTGAGAACTACCTGACACCTGAT GATGATCGAAGTCTGGAAGTGTGGAGGAAATTGCAGAGGCTAAAGAATGTCTGCTACGATTCTGGTTTCTCTCGTTCCGACGAATGTCCTTGCCATACGG TTTTGGCAAATTGGAATGCTGTTTATTCATCCTCGTTGAAGGAAGAGACCGAGTCGGAAAGCTCTGAGGCAGAATTTTGGATGGGAGGGCAAGTGACAGA GGAGGCCTTGAATTGGTTGTTGGAGAAGGGATTCAAGACTATTGTAGATCTTAGAGCAGAAACCATACAGGACAACTTTTACAAAGCAGCCATAGATCAT GCTATTTTGTCTGGGAAGATGGAACTGATTCAGATCCCCATTGAAGTTGGCACAGCACCTTCAGTGGAGCAAGTTGAACTGTTTGCATCATTGGTTTCAG ATTTCAGCAAAAAGCCGATTTACATTCATAGTAAGGAGGGAGTACAGAGAACTTCTGCAATGGTATCCAGATGGAGGCTGTTCAGGACTCGTATGCCATC TCAGGATACCAGTGAACAAAAAGAACTACAGACGATTTCTAGTGTGGACGAAGAGACCATTCTAAACCAGGAAAATGGATATGCTAGACATGCTTCACAG GAGCTTTACACTTCAAATGGGTCATCCCATGGTGAAGTTGACTCTTCAGTTAAATTTGGGAAAGCCCCAGGCATCAAAGGAACAGTGAACGGTCTAGGAT CTGTTCATACATCTTTGGAAAACATTGATGTAGTAGAAGTAGGTTCTTTACCGGATGCTGGCTGGGAAACCGACCCTCTAAACGCTCAGCTTCCTCCTTG TAATGTGTTCTCCAAGTCGGAGATGTCGAGATTCATGAAGACTAAAAAGGTTTCACCTTCCGCTTTTGCAAAGCATCAATCCACAAGGGTAAAGAAGATG CTTTTCTTGGGAGAGAATAACGTTTGGAAAAATGAGGCATCAGAGGTTCTCGAAAGAAAGAATCCTTCGGGTGCTAGTACAAGTGCTTCTCTGGGATCTC AAAGATCACTTCTTGTTGGTGAGAAGGATCTGAATAGGAACGGTCACCTTTCTGCTAGTGGAGATGTGAATGCCTCCAATACCGATGGGAGACAATCCAT GTTGCAAAATGGGGTCTCTACTAGTGTAAATAGAAGTTTAAGTGAAAATCTTAGATCTAACTATGTCAGCGATGATGAGCTGGGTCCGCTGGAAGGAGAC ATGTGTGCTTCTACGACTGGTGTTGTGAGGGTTCAGTCTCGAAAGAAAGCAGAGATGTTTCTCGTACGCACAGATGGTTTCTCCTGTACAAGAGAAAAAG TTAATGAATCTAGCTTGGCATTCAGTCATCCAAGTACACAGCAGCAGATGCTCATGTGGAAATCTCCACCGAAGACGGTCTTGTTGTTGAAGAAGCTGGG ACAAGAACTCATGGAGCAAGCTAAACAGGTTGCTTCTTTCTTATATCACCAAGAAAAAATGAATGTCGTCGTGGAACCTGATGTTCATGATATATTTGCT CGAATCCCAGGTTTTGGCTTCATTCAGACCTTTTACAGTCAAGACACAAGTGATCTTCATGAGAGGATTGATTTTGTTGCATGTTTGGGAGGAGATGGTG TCATACTTCATGCATCGAATTTGTTCCGAGATGCTGTTCCTCCCGTTGTGTCCTTTAATCTGGGATCTCTCGGATTCCTCACTTCACATAGTTTTGAAGA CTACCGGAAAGACCTAAAGCAGTTGATCCATGTCAACAACACAGTTGGTGTATATATAACTCTTAGAATGCGCCTCACGTGTGAAATATTTCGCCATGGT CAAGCCATCCCTGGAAAAGTATTTGAAGTCCTGAATGAGGTGGTCGTTGATCGGGGGTCAAATCCTTACCTTTCCAAGATCGAATGCTACGAACATGACC GCCTTATAACCAAGGTGCAAGGTGATGGAGTCATTGTGGCCACTCCTACTGGAAGTACTGCTTACTCTACTTCAGCTGGAGGTTCCATGGTGCATCCAAA TGTTCCTTGTATGCTCTTTACTCCAATCTGCCCCCACTCCCTCTCATTCCGGCCAGTCATACTTCCAGATTCTGCACGGATCGAGCTAAAGATTCCAGAA GATGCTCGAAGCAATGCGTGGGTATCTTTCGACGGGAAGCGAAGACAGCAACTTTCTAGAGGAGATTCAGTCAAGATATCGATGAGCCAGCACCCTCTTC CCACCGTCAACAAATACGACCAAACCGGCGACTGGTTCCACAGCTTGGTTCGCTGCCTGAACTGGAACGAAAGGCTAGACCAGAAAGCCTTGTGA
AA sequence Show only first row Show all	>Lus10000856 pacid=23173568 polypeptide=Lus10000856 locus=Lus10000856.g ID=Lus10000856.BGIv1.0 annot-version=v1.0 MSRLSSPVVGAFILSPPPPNGDGCCKSTVEFQRRRRRKFRFVVSAEFPKSFSLDLGFDHSLNDQSNDQSQSPWIGPIPGDIAEVEAYCRIFRAAERFHTA LMNTLCNPVTGECGVSYDFPPEERPVLEQKIVSVLGAVLSLLNKGRKDVLSGRSSIMSSFRISDVSTMEDKLPPLAVFRSEMKRCCESLHVALENYLTPD DDRSLEVWRKLQRLKNVCYDSGFSRSDECPCHTVLANWNAVYSSSLKEETESESSEAEFWMGGQVTEEALNWLLEKGFKTIVDLRAETIQDNFYKAAIDH AILSGKMELIQIPIEVGTAPSVEQVELFASLVSDFSKKPIYIHSKEGVQRTSAMVSRWRLFRTRMPSQDTSEQKELQTISSVDEETILNQENGYARHASQ ELYTSNGSSHGEVDSSVKFGKAPGIKGTVNGLGSVHTSLENIDVVEVGSLPDAGWETDPLNAQLPPCNVFSKSEMSRFMKTKKVSPSAFAKHQSTRVKKM LFLGENNVWKNEASEVLERKNPSGASTSASLGSQRSLLVGEKDLNRNGHLSASGDVNASNTDGRQSMLQNGVSTSVNRSLSENLRSNYVSDDELGPLEGD MCASTTGVVRVQSRKKAEMFLVRTDGFSCTREKVNESSLAFSHPSTQQQMLMWKSPPKTVLLLKKLGQELMEQAKQVASFLYHQEKMNVVVEPDVHDIFA RIPGFGFIQTFYSQDTSDLHERIDFVACLGGDGVILHASNLFRDAVPPVVSFNLGSLGFLTSHSFEDYRKDLKQLIHVNNTVGVYITLRMRLTCEIFRHG QAIPGKVFEVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTSAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARIELKIPE DARSNAWVSFDGKRRQQLSRGDSVKISMSQHPLPTVNKYDQTGDWFHSLVRCLNWNERLDQKAL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Lus10000856 [exp]	0	1
AT2G12400			unknown protein		Lus10008813 [exp]	2.2	0.9182
AT5G38520			alpha/beta-Hydrolases superfam...		Lus10003969 [exp]	7.9	0.8951
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10022278 [exp]	8.0	0.8805
AT3G14470			NB-ARC domain-containing disea...		Lus10004127 [exp]	12.4	0.8830
AT3G53470			unknown protein		Lus10014016 [exp]	14.0	0.8875
AT5G20140			SOUL heme-binding family prote...		Lus10013345 [exp]	16.5	0.8864
AT5G19740			Peptidase M28 family protein (...		Lus10043036 [exp]	18.1	0.8472
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Lus10001839 [exp]	20.0	0.8801
AT5G02830			Tetratricopeptide repeat (TPR)...		Lus10015053 [exp]	20.5	0.8822
AT4G19830			FKBP-like peptidyl-prolyl cis-...		Lus10036206 [exp]	23.5	0.8275

Compare expression of checked genes

Lus10000856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.