Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77330 430 / 1e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G62380 306 / 2e-103 ATACO2, ACO2 ACC oxidase 2 (.1) AT1G12010 300 / 3e-101 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G05010 290 / 2e-97 ACO4, EAT1, EFE ethylene forming enzyme, ethylene-forming enzyme (.1) AT2G19590 246 / 4e-80 ATACO1, ACO1 ACC oxidase 1 (.1) AT4G10490 194 / 3e-59 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 188 / 2e-57 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 187 / 2e-56 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 185 / 6e-56 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 183 / 1e-54 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028678 [exp] 606 / 0 AT1G77330 435 / 1e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10035334 [exp] 311 / 2e-105 AT1G05010 495 / 6e-178 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10029992 [exp] 309 / 1e-104 AT1G05010 496 / 2e-178 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10015153 [exp] 305 / 3e-103 AT1G05010 501 / 1e-180 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10031530 [exp] 301 / 1e-101 AT1G05010 498 / 3e-179 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10008564 [exp] 268 / 1e-88 AT2G19590 423 / 6e-150 ACC oxidase 1 (.1) Lus10005037 [exp] 194 / 4e-59 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004387 [exp] 183 / 5e-55 AT3G11180 509 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10024882 [exp] 182 / 7e-55 AT5G24530 271 / 2e-89 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G182700 [exp] 483 / 2e-173 AT1G77330 461 / 4e-165 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G078600 [exp] 479 / 3e-172 AT1G77330 455 / 1e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.004G003000 [exp] 313 / 3e-106 AT1G05010 467 / 6e-167 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.014G159000 [exp] 312 / 7e-106 AT1G05010 464 / 8e-166 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.002G224100 [exp] 311 / 1e-105 AT1G05010 440 / 2e-156 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.011G020900 [exp] 311 / 2e-105 AT1G05010 473 / 1e-169 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.006G151600 [exp] 263 / 7e-87 AT2G19590 462 / 2e-165 ACC oxidase 1 (.1) Potri.006G101100 [exp] 200 / 1e-61 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 195 / 1e-59 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G048900 [exp] 191 / 8e-58 AT2G36690 250 / 5e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10000857 pacid=23173565 polypeptide=Lus10000857 locus=Lus10000857.g ID=Lus10000857.BGIv1.0 annot-version=v1.0 ATGGCTATCCCAGTGGTTGATTTCTCCAAGGTTACCAATGGTGGTGCTACTCCTGAGGAGAGAGCTGAAACCATGGCCCTCATTGCCAAATGCTGCGAGG AATGGGGCTTCTTTCAGCTGGTGAACCATGGGGTGCCAGAAGAGCTTCTGGAGAGGGTGAAGAAAGTTAGTTCAGAGTTCTTCAAGCATGAAAGAGAGCA AAGCTTCAAGGAATCTGAAGTTTTCAAGTCACTGAGTAATGTGGTGGATGGCCAGAAGCTTGAGAATGTGGATTGGGAAGATGTCATCACACTTCTTGAT GACAATGAGTGGCCATCACAGACTCATGGATTCAAGGAGACAATAACAGAGTACAGGGCAGAGCTGAGGAAGCTTGCAGAGAAAATAATGGAAGTGATGG ATGAGAACTTAGGGTTACCAAAAGGGTACATCAAGAAAGCCTTCAACAATGGCGAAACAACAACGGAAGGAGGGAAAGGATCAGCCTTTTTCGGCACGAA AGTCAGCCACTATCCGCCATGCCCCAACCCGGAGAAGGTGAGTGGACTCCGAGCACACACCGATGCCGGTGGGGTGATCTTGCTGTTCCAGGACGATGAA GTTGGCGGCCTCCAGGTCCTGAAAGACGGAGAGTGGATCGATGTCCAGCCGATGAAGAACAGCATTGTGATCAACACCGGTGACCAAGTCGAGGTTTTGA GCAATGGTAGGTACAAGAGCGCCTGGCACCGAGTCCTGGCGAAATCGGATGGGAACCGGAGGTCTATCGCCTCGTTCTACAACCCTTCGCTCACCGCCAC CATTGCTCCGGCGGATGAGCTTGTTGTGGAAGAGGTCAACAGCAAAGCTGATGAGGGCATAATGTATCCCAAGTTTGTGTTTGGGGATTACATGTCTGTT TATGCCGAGCAGAAGTTCGAACCGAAGGAGCCCAGGTTCCTGGCTGTGAAGGCCATGTGA
AA sequence Show only first row Show all	>Lus10000857 pacid=23173565 polypeptide=Lus10000857 locus=Lus10000857.g ID=Lus10000857.BGIv1.0 annot-version=v1.0 MAIPVVDFSKVTNGGATPEERAETMALIAKCCEEWGFFQLVNHGVPEELLERVKKVSSEFFKHEREQSFKESEVFKSLSNVVDGQKLENVDWEDVITLLD DNEWPSQTHGFKETITEYRAELRKLAEKIMEVMDENLGLPKGYIKKAFNNGETTTEGGKGSAFFGTKVSHYPPCPNPEKVSGLRAHTDAGGVILLFQDDE VGGLQVLKDGEWIDVQPMKNSIVINTGDQVEVLSNGRYKSAWHRVLAKSDGNRRSIASFYNPSLTATIAPADELVVEEVNSKADEGIMYPKFVFGDYMSV YAEQKFEPKEPRFLAVKAM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Lus10000857 [exp]	0	1
AT2G03760		AtSOT12, AtSOT1...	ARABIDOPSIS THALIANA SULFOTRAN...		Lus10031623 [exp]	2.6	0.9432
AT5G59070			UDP-Glycosyltransferase superf...		Lus10016475 [exp]	2.8	0.9323
AT1G72230			Cupredoxin superfamily protein...		Lus10027043 [exp]	3.5	0.9389
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Lus10001816 [exp]	4.2	0.9343
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10031285 [exp]	10.4	0.9138
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Lus10009939 [exp]	11.0	0.9110
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10004670 [exp]	12.0	0.9320
AT5G14920			Gibberellin-regulated family p...		Lus10032168 [exp]	12.2	0.9299
AT1G54650			Methyltransferase family prote...		Lus10006576 [exp]	13.2	0.9207
AT5G19730			Pectin lyase-like superfamily ...		Lus10012942 [exp]	16.6	0.9145

Compare expression of checked genes

Lus10000857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.