Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028679 [exp] 140 / 4e-40 AT5G61890 130 / 1e-35 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000858 pacid=23173573 polypeptide=Lus10000858 locus=Lus10000858.g ID=Lus10000858.BGIv1.0 annot-version=v1.0 ATGTGCTTAAAGGTGGCGGACCAACAAGGCGGAAACGGCGGTGGAAGCGGCGGCGGAGATCCGTACTTGTCCCCTTCCACTACTTCTTCCTCGTACGGCG GCGATCTTCAAGATGCCGCCGCCGACCAAAATCAGCAACAAGACGGGAGTTTTTTCACCTTTCGGGATACCCAACAGAATTTTGTTCCTGCCCATCTCCA CCAATTCCAGCTTCATCAACAAAATCAGCAGCGAATTGAAGGGTTGAATCCGATAATGATGAATATGATGGATAACAGCAGCAGTAATATCGTTTCTAAT CAGACGACTCCTAGGAGCGCTAGGGAGATGTCCGCCATGGTTTCTGCTCTCACCCACGTCGTCTCCGGCACCAGACAGTGGGGATACGGCGGCGGAGCTC CGGCGAGTTCTGGTAATTCTTCTGGGTTGTGGACGGCGGTTGGGCAGAAGAGGGGAAGAGAAGATGAAAATCGAGGGGAAGGTTCTAGTAATCAATTGGT TGATAGGGAAATGGTTTTCCGTGGTGGGTTTGATCGTGATTTCGTCGTCCATGGCGGTGATTCTTCTTCCTCCGGTGCAACTGACGTTATCGGATTAGAC TCGATCGTGTAG
AA sequence Show only first row Show all	>Lus10000858 pacid=23173573 polypeptide=Lus10000858 locus=Lus10000858.g ID=Lus10000858.BGIv1.0 annot-version=v1.0 MCLKVADQQGGNGGGSGGGDPYLSPSTTSSSYGGDLQDAAADQNQQQDGSFFTFRDTQQNFVPAHLHQFQLHQQNQQRIEGLNPIMMNMMDNSSSNIVSN QTTPRSAREMSAMVSALTHVVSGTRQWGYGGGAPASSGNSSGLWTAVGQKRGREDENRGEGSSNQLVDREMVFRGGFDRDFVVHGGDSSSSGATDVIGLD SIV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000858 [exp]	0	1
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10014146 [exp]	1.0	0.9886
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Lus10020783 [exp]	2.4	0.9850
AT2G02240		MEE66	maternal effect embryo arrest ...		Lus10023207 [exp]	5.0	0.9840
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10017522 [exp]	5.7	0.9800
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10010534 [exp]	6.0	0.9816
					Lus10000859 [exp]	6.9	0.9839
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Lus10018243 [exp]	7.0	0.9723
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10027614 [exp]	7.5	0.9826
AT5G10530			Concanavalin A-like lectin pro...		Lus10020456 [exp]	8.4	0.9802
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10004460 [exp]	8.8	0.9814

Compare expression of checked genes

Lus10000858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.