Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26010 52 / 3e-07 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G49610 52 / 4e-07 F-box family protein (.1) AT1G49990 45 / 7e-05 F-box family protein (.1) AT3G48220 42 / 0.0003 unknown protein AT3G23950 43 / 0.0004 F-box family protein (.1) AT3G23970 42 / 0.0006 F-box family protein (.1) AT5G15710 42 / 0.001 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028682 [exp] 776 / 0 AT5G49610 62 / 2e-10 F-box family protein (.1) Lus10003922 [exp] 273 / 2e-87 AT3G26010 60 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037467 [exp] 273 / 2e-86 AT3G26010 61 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10036954 [exp] 177 / 2e-51 ND 48 / 5e-06 Lus10003923 [exp] 161 / 2e-45 ND 40 / 0.002 Lus10036951 [exp] 117 / 1e-30 ND 44 / 2e-05 Lus10019151 [exp] 118 / 4e-30 ND / Lus10037619 [exp] 95 / 7e-23 AT5G49610 48 / 5e-07 F-box family protein (.1) Lus10006880 [exp] 94 / 3e-21 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004800 [exp] 83 / 4e-17 AT5G49610 65 / 3e-11 F-box family protein (.1) Potri.011G000700 [exp] 74 / 5e-14 AT3G15910 58 / 5e-09 unknown protein Potri.010G149000 [exp] 59 / 2e-09 AT5G49610 528 / 0.0 F-box family protein (.1) Potri.009G132400 [exp] 59 / 3e-09 ND / Potri.007G027300 [exp] 49 / 6e-06 AT5G49610 80 / 2e-16 F-box family protein (.1) Potri.011G121200 [exp] 47 / 1e-05 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058900 [exp] 47 / 1e-05 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.001G462650 [exp] 46 / 3e-05 AT1G64295 121 / 3e-31 F-box associated ubiquitination effector family protein (.1) Potri.010G254000 [exp] 45 / 9e-05 AT5G07610 149 / 1e-40 F-box family protein (.1) Potri.007G037500 [exp] 42 / 0.0005 AT1G64295 130 / 9e-35 F-box associated ubiquitination effector family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000860 pacid=23173564 polypeptide=Lus10000860 locus=Lus10000860.g ID=Lus10000860.BGIv1.0 annot-version=v1.0 ATGGGTAGCTTACTATGCATCAACGATGTCCTGTCTCACCATTTGCTGATAGAAGTTTTGGTTCGAATTCCATTGAGAGATGCTTTTCGATCTAGGCTTG TATGCAAAATGTGGCTCTCGACTCTCCGCGACGACCCACATTACGTTGCTGGATTCGTTGACCACCGAATCAGTGAACTGAAGTCGAACAGCAACGAGGA GGATGATCAGAAGCTGATCAATGTGCAATGGCATCACAGCGAAATGCTTCTGGTAAAATCATCCGATAATGCTCTCACAGCTTCCCAATTATCGTTGGAT TTCCTCCCGTTCCACGATGAATTCACTTCTCCATGCCGGAGGATTTCGATTCGGGAGATTGTAGGCTCTTCCAACGGCTTGATCTTGTTCTTGCCTATCA AGAAGACTGCTTGTGTCGAGTATTACATTGTCAATCCTCTTACTAAGCAGTGGCTTGCACTCCCGTCTCCTCCCCGTCGCCACCTTCTCGATGTACAGGT CGGTTTTATCTGCGATCCATTCTATTACCGTAGTATCGATAATGATTTGGTCGCTTTGAATGATGAATTCGGTATGAAGGTGGTCCGTCTGTATTATGGT CTTGTCAATGTCGAAACTAACCGTCCTGAGACGATGGATGTGGAGGTGTTCTCATCCCGGACAGGAATCTGGACTACATCTAAGGTGCAATTGCCTAAGG GTGTTCGATTCAAAACCGATCCCGGACCTCTGGTTCCATACGAAGGAAGGCTTTACTGGCTGGTGGAACAATGTGACATTCTGATCTATGATTCTGAACA GAACGAGTTTCTCCTCGAGCGACACGACCCTCCGCGGGAAGCGTTGTACACTTTCGGATATTGGGTGAGGCAGTTGGCTGCATTCAGAGGGCTTAGCCTA TGTCAAGGCTCGTTTTGCATCGGTCAAGCTTGGAATGCGCGGGTGAGAGTGTTTATGCTCTCAGCCGACGATGGCAAATGGTGTCTAAAGCACGACGTTG ACCTCTACAATGAGATGCATTGCAGTTCGAATTCAGTGAGGCAGAAGGTGCGATTCTACCCCGAATCGATGGTGTTCAGGACTATGCACCCCGACAATTC CATGGTGGCGTACTTGACCCTGGGCAGTGCGATCCTCGAGTGTAATTTCTGGTACAAGACGATGAAAGTGATATCCGATCGTCATGACAATCGCTACGAG GGTGTTAATTCGATGCTCCTCGCCTGGTCTAACGTGGTTACGTGTTCTCTTCCATTGTGGCCTACTCCTCTTCCTGCAACTCCCAACTGTTTGAAGAAAG TTCGGTTCGATTCGATTGATGAATTGAACTAG
AA sequence Show only first row Show all	>Lus10000860 pacid=23173564 polypeptide=Lus10000860 locus=Lus10000860.g ID=Lus10000860.BGIv1.0 annot-version=v1.0 MGSLLCINDVLSHHLLIEVLVRIPLRDAFRSRLVCKMWLSTLRDDPHYVAGFVDHRISELKSNSNEEDDQKLINVQWHHSEMLLVKSSDNALTASQLSLD FLPFHDEFTSPCRRISIREIVGSSNGLILFLPIKKTACVEYYIVNPLTKQWLALPSPPRRHLLDVQVGFICDPFYYRSIDNDLVALNDEFGMKVVRLYYG LVNVETNRPETMDVEVFSSRTGIWTTSKVQLPKGVRFKTDPGPLVPYEGRLYWLVEQCDILIYDSEQNEFLLERHDPPREALYTFGYWVRQLAAFRGLSL CQGSFCIGQAWNARVRVFMLSADDGKWCLKHDVDLYNEMHCSSNSVRQKVRFYPESMVFRTMHPDNSMVAYLTLGSAILECNFWYKTMKVISDRHDNRYE GVNSMLLAWSNVVTCSLPLWPTPLPATPNCLKKVRFDSIDELN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49610			F-box family protein (.1)		Lus10000860 [exp]	0	1
AT1G33970			P-loop containing nucleoside t...		Lus10005299 [exp]	2.2	0.9215
AT4G32430			Pentatricopeptide repeat (PPR)...		Lus10021355 [exp]	3.7	0.9301
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Lus10010496 [exp]	8.9	0.9010
AT5G49610			F-box family protein (.1)		Lus10028682 [exp]	9.2	0.8964
AT2G03820			nonsense-mediated mRNA decay N...		Lus10025109 [exp]	10.0	0.9063
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10004474 [exp]	10.2	0.9007
AT5G37830		OXP1	oxoprolinase 1 (.1)		Lus10024411 [exp]	12.8	0.8890
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10041934 [exp]	13.4	0.8916
					Lus10040444 [exp]	14.4	0.9322
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Lus10034470 [exp]	16.5	0.8768

Compare expression of checked genes

Lus10000860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.