Plant FIBer expression Database

Lus10000861 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017345
[exp]
45 / 4e-06 AT3G17220 89 / 1e-22 pectin methylesterase inhibitor 2 (.1)
Lus10001658
[exp]
45 / 7e-06 AT1G48020 86 / 4e-21 ARABIDOPSIS THALIANA PECTIN METHYLESTERASE INHIBITOR 1, pectin methylesterase inhibitor 1 (.1)
Lus10017347
[exp]
43 / 3e-05 AT3G17220 81 / 2e-19 pectin methylesterase inhibitor 2 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G013300
[exp]
41 / 0.0001 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04043 PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence
>Lus10000861 pacid=23173572 polypeptide=Lus10000861 locus=Lus10000861.g ID=Lus10000861.BGIv1.0 annot-version=v1.0
ATGATGTTAATTATGGTAACATCATCAAATTATAGTGCAAAATATCATGACCATATCTACAACAAAGCTCATCCAAGACATTTGCAAACAAGCATCCCAA
ATCCCACCAACGAAATTCCAAGACTGCCTAGCCACATTCGCCTCCGATCCGAGGCGCCCTCCGCGGACCTCAAGGGTCTAGACATAATCACCTTCCAAAA
CGGGACGGGAACTGTCGAGGACGGAGTGAAGTACATCAGGGGCCTTCTTGGCGCCCCGGGGCTGCCCCCGGCCCATAAGGACTCACTCAAGGTCTGTGTG
GGCGCGTTCTTGACCTCGGGGTTTTCGTTCTTGAACGCGTGGACGGAGATCAAGGCCGGGGACATCGAGTCTGCTAAGAGGGATGTTATGGTCGTAGGGG
ATGATGCAAGGACCTGTCTCGTTACTTTGGCTAAAGGGAAGATTTCGGAAAGCTCGGTTGAAGTTCGAATGGATCACTTGATAATTTTAAGTAACATTGC
CAGTGTTATCACCGGTCGTTTATAA
AA sequence
>Lus10000861 pacid=23173572 polypeptide=Lus10000861 locus=Lus10000861.g ID=Lus10000861.BGIv1.0 annot-version=v1.0
MMLIMVTSSNYSAKYHDHIYNKAHPRHLQTSIPNPTNEIPRLPSHIRLRSEAPSADLKGLDIITFQNGTGTVEDGVKYIRGLLGAPGLPPAHKDSLKVCV
GAFLTSGFSFLNAWTEIKAGDIESAKRDVMVVGDDARTCLVTLAKGKISESSVEVRMDHLIILSNIASVITGRL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10000861
[exp]
0 1
AT1G12740 CYP87A2 "cytochrome P450, family 87, s... Lus10027434
[exp]
1.0 0.9162
Lus10026928
[exp]
6.0 0.8840
AT2G46150 Late embryogenesis abundant (L... Lus10027177
[exp]
7.3 0.8840
AT2G23600 ATMES2, ACL, AT... ARABIDOPSIS THALIANA METHYL ES... Lus10012854
[exp]
8.5 0.8840
AT3G04720 HEL, PR-4, PR4 HEVEIN-LIKE, pathogenesis-rela... Lus10013728
[exp]
9.5 0.8840
AT4G37330 CYP81D4 "cytochrome P450, family 81, s... Lus10024817
[exp]
10.4 0.8840
AT1G74100 SOT16, ATSOT16,... CORONATINE INDUCED-7, ARABIDOP... Lus10018047
[exp]
10.9 0.8771
AT1G12740 CYP87A2 "cytochrome P450, family 87, s... Lus10005762
[exp]
13.3 0.8759
AT3G07680 emp24/gp25L/p24 family/GOLD fa... Lus10006360
[exp]
13.7 0.8718
AT2G37010 ATNAP12 non-intrinsic ABC protein 12 (... Lus10023199
[exp]
14.5 0.8468

Lus10000861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.