Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06430 644 / 0 AtPPR2, EMB2750 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53170 342 / 9e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48730 325 / 4e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39620 170 / 4e-47 ATPPR5, EMB2453 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G02860 147 / 1e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74850 140 / 2e-35 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT3G18110 132 / 1e-32 EMB1270 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 131 / 1e-32 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G16010 131 / 2e-32 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G18940 122 / 3e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028683 [exp] 920 / 0 AT3G06430 640 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027552 [exp] 535 / 0 AT3G06430 501 / 1e-175 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039311 [exp] 380 / 3e-131 AT3G06430 358 / 5e-123 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022787 [exp] 335 / 1e-109 AT5G48730 687 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011849 [exp] 330 / 8e-108 AT5G48730 681 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024893 [exp] 306 / 6e-99 AT3G53170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035850 [exp] 168 / 3e-46 AT4G39620 579 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10013894 [exp] 145 / 7e-37 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 143 / 2e-36 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G153900 [exp] 644 / 0 AT3G06430 717 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G098700 [exp] 634 / 0 AT3G06430 692 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G243600 [exp] 349 / 2e-115 AT5G48730 691 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G058300 [exp] 324 / 6e-106 AT3G53170 618 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G082400 [exp] 166 / 1e-45 AT4G39620 625 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G046200 [exp] 137 / 8e-35 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.007G123900 [exp] 138 / 2e-34 AT3G18110 1974 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G069100 [exp] 135 / 7e-34 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.017G036400 [exp] 135 / 1e-33 AT3G18110 1949 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G123600 [exp] 129 / 6e-32 AT2G35130 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10000862 pacid=23173566 polypeptide=Lus10000862 locus=Lus10000862.g ID=Lus10000862.BGIv1.0 annot-version=v1.0 ATGTCCCTCCAATTTTCCTCAATCCTCCAAACTCCTTCCGGCCGATTAACCGGGACCCGCCAATACCCTCCCGCCGGATACCGATCTTCATCGTCCTTAT TCTTTAACTTCCGCATCCGTCCATCGTTTCATCCGGTCTCTGTCGTTGCTTCATCCGCGCCGGCGACAACACGCCGACACTGGAAGCAAGGCGAATTCCC TGGCAGAACGCAGTCTTCCGACTCCGATCGTCGCAATGCACCACTGAAGAACGCGAAGAAGAAGCTGGATCGTAAGGAGGACGCTACAGCTTGGGCGAAC ACCGTCACTGAAGCACTCTCCGAGGCCATCGCGAACAAGCAGTGGCAGCGGTCTCTCGAGGTCTTCGAGATGCTGAAACAGCAGAGTTTCTACCATCCGA AAGAAGGTACATACATGAAACTCCTAGTCCTTTTAGGAAAATCTGGACAGCCTGAACTTGCACACCAACTGTTCGACGAAATGCTCGAACAGGGAATTCC TCCCACAACTGAACTCTATACTGCACTCCTCGGTGCTTATCGCCGTAGTGGATTAATCGATAAGGCTTTTGAAATCCTCGATGTTATGAAATCGATACCG CAATGTCAGCCTGATGTGTTCACTTACAGCATGATCCTCAAGGCCTGCGTCGATTCGTCCCGATTTGATCTCGTGGATTCGATCTACTCCGAAATGGAGA AAGGCTTAATCTCGCTGAATACCGTGACTCAGAACATCGTGTTAAGCGGATACTGTAAAGCCGGATTATACGATCAAATGGAGAAAGTCTTATCATCAAT GCTGCAGAATCCGAATTCGAAACCGGACGTATGGACGATGAACATAATCATCGCGATATTCGGCAATAACGGCCAAATCGAGTTGATGGAGCAATGGTAC GAGAAGTTTCGAGACTACGGAGTCGAGCCAGAGACACGAACTTTCAACATCCTGATCGGAGCGTACGGGAAAGCTCGAAGGTACGACAAGATGTCTTCGG TGATGGAGTACATGCGCAAGCTCGAGTATCCATGGACGAGCTCGACCTACAACAACGTGATCGAGGCTTTTGCCGATGTCGGGGACTCGAAGAACATGGA GTACACGTTCGACCAGATGCGGGCCGAGAGGATGAAGGCCGATTCGAAGACTTTCTCATGTCTGGTTCGAGGGTACGCGAACTCCGGGATGTATGGTAAA GTGATCAAGACGGTAGAACTCGCTGCGAGGCTGGAGATTCCGAGGGATAAATCGTTTTATAACGCGGTGATCGAGGCGTGCGCCAAGGCCGGGGATTTGA TGGAGATGGAGAGAGTTTATGTGAGGATGAAGGAGGAGAAGTGTGAAGGTGACGAGGTTACTTATAAGGTTATGATGGATGCTTATAGGGAAGAAGGGAT GAATGATAAAGTTTACTATTTGGAGCAAGAGATTATTGCTGCTCGGGTCGGGTCGGATGGAAAGCTGTGA
AA sequence Show only first row Show all	>Lus10000862 pacid=23173566 polypeptide=Lus10000862 locus=Lus10000862.g ID=Lus10000862.BGIv1.0 annot-version=v1.0 MSLQFSSILQTPSGRLTGTRQYPPAGYRSSSSLFFNFRIRPSFHPVSVVASSAPATTRRHWKQGEFPGRTQSSDSDRRNAPLKNAKKKLDRKEDATAWAN TVTEALSEAIANKQWQRSLEVFEMLKQQSFYHPKEGTYMKLLVLLGKSGQPELAHQLFDEMLEQGIPPTTELYTALLGAYRRSGLIDKAFEILDVMKSIP QCQPDVFTYSMILKACVDSSRFDLVDSIYSEMEKGLISLNTVTQNIVLSGYCKAGLYDQMEKVLSSMLQNPNSKPDVWTMNIIIAIFGNNGQIELMEQWY EKFRDYGVEPETRTFNILIGAYGKARRYDKMSSVMEYMRKLEYPWTSSTYNNVIEAFADVGDSKNMEYTFDQMRAERMKADSKTFSCLVRGYANSGMYGK VIKTVELAARLEIPRDKSFYNAVIEACAKAGDLMEMERVYVRMKEEKCEGDEVTYKVMMDAYREEGMNDKVYYLEQEIIAARVGSDGKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10000862 [exp]	0	1
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10019033 [exp]	2.6	0.9580
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031791 [exp]	3.5	0.9524
AT1G14030			Rubisco methyltransferase fami...		Lus10036780 [exp]	5.7	0.9385
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10017912 [exp]	6.0	0.9476
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10000483 [exp]	6.2	0.9480
AT3G53700		MEE40	maternal effect embryo arrest ...		Lus10012328 [exp]	6.5	0.9394
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Lus10020545 [exp]	8.1	0.9423
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Lus10041602 [exp]	9.5	0.9311
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Lus10036651 [exp]	9.8	0.9294
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10014819 [exp]	10.2	0.9469

Compare expression of checked genes

Lus10000862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.