Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23100 266 / 2e-89 Protein of unknown function, DUF617 (.1) AT3G25640 203 / 7e-65 Protein of unknown function, DUF617 (.1) AT2G41660 176 / 8e-54 MIZ1 mizu-kussei 1, Protein of unknown function, DUF617 (.1) AT5G06990 161 / 2e-48 Protein of unknown function, DUF617 (.1) AT4G39610 154 / 1e-45 Protein of unknown function, DUF617 (.1) AT2G21990 147 / 4e-43 Protein of unknown function, DUF617 (.1) AT2G37880 144 / 5e-42 Protein of unknown function, DUF617 (.1) AT5G42680 134 / 3e-38 Protein of unknown function, DUF617 (.1.2) AT1G21050 127 / 1e-35 Protein of unknown function, DUF617 (.1) AT1G76610 112 / 4e-30 Protein of unknown function, DUF617 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009615 [exp] 418 / 1e-149 AT5G23100 258 / 4e-86 Protein of unknown function, DUF617 (.1) Lus10027241 [exp] 274 / 2e-92 AT5G23100 270 / 1e-90 Protein of unknown function, DUF617 (.1) Lus10019166 [exp] 209 / 6e-67 AT3G25640 258 / 2e-86 Protein of unknown function, DUF617 (.1) Lus10034386 [exp] 208 / 2e-66 AT3G25640 268 / 3e-90 Protein of unknown function, DUF617 (.1) Lus10031059 [exp] 189 / 7e-59 AT2G41660 258 / 4e-85 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10035443 [exp] 188 / 3e-58 AT2G41660 248 / 4e-81 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10038951 [exp] 169 / 4e-53 AT5G23100 159 / 1e-49 Protein of unknown function, DUF617 (.1) Lus10036630 [exp] 155 / 3e-45 AT4G39610 308 / 5e-105 Protein of unknown function, DUF617 (.1) Lus10035847 [exp] 154 / 4e-45 AT2G21990 306 / 1e-104 Protein of unknown function, DUF617 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G058300 [exp] 287 / 5e-98 AT5G23100 261 / 7e-88 Protein of unknown function, DUF617 (.1) Potri.015G053000 [exp] 285 / 3e-97 AT5G23100 293 / 3e-100 Protein of unknown function, DUF617 (.1) Potri.010G131600 [exp] 231 / 5e-76 AT3G25640 249 / 1e-82 Protein of unknown function, DUF617 (.1) Potri.008G114500 [exp] 206 / 3e-66 AT3G25640 228 / 2e-74 Protein of unknown function, DUF617 (.1) Potri.016G056800 [exp] 188 / 7e-59 AT2G41660 202 / 6e-64 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.006G048800 [exp] 186 / 3e-58 AT2G41660 241 / 3e-79 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.001G031900 [exp] 160 / 5e-48 AT5G06990 275 / 6e-93 Protein of unknown function, DUF617 (.1) Potri.003G193700 [exp] 159 / 1e-47 AT5G06990 328 / 6e-114 Protein of unknown function, DUF617 (.1) Potri.005G084000 [exp] 154 / 1e-45 AT2G21990 327 / 4e-114 Protein of unknown function, DUF617 (.1) Potri.014G035000 [exp] 136 / 3e-39 AT5G42680 286 / 2e-98 Protein of unknown function, DUF617 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04759 [flax] [poplar] DUF617 Protein of unknown function, DUF617
Representative CDS sequence Show only first row Show all	>Lus10000863 pacid=23158805 polypeptide=Lus10000863 locus=Lus10000863.g ID=Lus10000863.BGIv1.0 annot-version=v1.0 ATGTCCAAAACTTCTCAACAACCCTTCTCCACTTCCAAGCGCCACCACCACCACCACCACTTCCACTGGACTCAAAAAGTCAGCTCAAACGACGACGAAC TCGAACCCGAATCCTCAACCCCATCTATCAAACCATCCGCCTCCAAGATCATCAGAGACGACGAAACATCACCCTCAACCAACAATCCCGCCGTAAAGAA GCTGTTACCGGCGAGGCTCCGGTCCGTCCTGTCCACATTCAGCAGAAACAGAGCAGCAAACCCGCCGGGTCTGGGGTCCCAGGTCGTGGGCACTCTGTTC GGGTCACGGAAGGGCCACGTCATCCATTTCGCGTTCCAGAAGGAACCCAACTCGCCGCCAGCCTTTCTGATCGAGCTCGCTACTCCGATTGGTGGGCTGG TTAAGGAGATGGCGTCCGGGCTGGTTCGGATCGCGCTGGAGTGCGACAAACGGAAGCGTGTTGGGTCCGGGTCGGGTGTGGGGGCGGGGTCGGGCGCTGG ACGGCTGTTGGAGGAGCCGGGTTGGAGGGCGTACTGTAACGGGAAGAAATGCGGGTTCGGGTCGAGGAAAGAGTGTGGTGAGAAGGAAGTGAAGGTGTTG AAGGCTGTGGAGATGATCTCCATGGGTGCTGGTGTGATGCCACCGAGTGATGGTGGAGATGATGAGGTTATGTATATGAGAGCTAAGTTCGAGAGGATTG TCGGGTCGAGAGATTCGGAGGCTTTTTACATGATGAACCCGGACCGGCATGGCGCTCCGGAGCTGAGTATCTATCTGCTTAGAGTCTGA
AA sequence Show only first row Show all	>Lus10000863 pacid=23158805 polypeptide=Lus10000863 locus=Lus10000863.g ID=Lus10000863.BGIv1.0 annot-version=v1.0 MSKTSQQPFSTSKRHHHHHHFHWTQKVSSNDDELEPESSTPSIKPSASKIIRDDETSPSTNNPAVKKLLPARLRSVLSTFSRNRAANPPGLGSQVVGTLF GSRKGHVIHFAFQKEPNSPPAFLIELATPIGGLVKEMASGLVRIALECDKRKRVGSGSGVGAGSGAGRLLEEPGWRAYCNGKKCGFGSRKECGEKEVKVL KAVEMISMGAGVMPPSDGGDDEVMYMRAKFERIVGSRDSEAFYMMNPDRHGAPELSIYLLRV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23100			Protein of unknown function, D...		Lus10000863 [exp]	0	1
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Lus10001668 [exp]	1.4	0.8996
AT2G36570			Leucine-rich repeat protein ki...		Lus10017178 [exp]	4.9	0.8865
AT1G79420			Protein of unknown function (D...		Lus10001755 [exp]	6.0	0.8895
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10006057 [exp]	7.3	0.8357
AT1G21090			Cupredoxin superfamily protein...		Lus10018856 [exp]	7.5	0.8635
AT1G79420			Protein of unknown function (D...		Lus10001843 [exp]	8.0	0.8864
AT5G15210	ZF_HD	ATHB30, ZFHD3, ...	ZINC FINGER HOMEODOMAIN 8, ZIN...		Lus10030679 [exp]	9.4	0.8458
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10029701 [exp]	9.9	0.8407
AT3G09550			Ankyrin repeat family protein ...		Lus10015037 [exp]	9.9	0.8166
AT2G47500			P-loop nucleoside triphosphate...		Lus10010300 [exp]	10.2	0.8639

Compare expression of checked genes

Lus10000863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.