Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23090 232 / 4e-79 CCAAT NF-YB13 "nuclear factor Y, subunit B13", nuclear factor Y, subunit B13 (.1.2.3.4) AT5G08190 201 / 1e-66 CCAAT NF-YB12 "nuclear factor Y, subunit B12", nuclear factor Y, subunit B12 (.1.2) AT2G38880 69 / 2e-15 CCAAT ATNF-YB1, ATHAP3, HAP3A "nuclear factor Y, subunit B1", HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3A, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, NUCLEAR FACTOR Y SUBUNIT B1, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, nuclear factor Y, subunit B1 (.1.2.3.4.5.6.7.8) AT2G37060 65 / 2e-13 CCAAT NF-YB8 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) AT5G47670 65 / 3e-13 CCAAT NF-YB6, L1L "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) AT4G14540 64 / 4e-13 CCAAT NF-YB3 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) AT3G53340 63 / 8e-13 CCAAT NF-YB10 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) AT5G47640 63 / 1e-12 CCAAT NF-YB2, HAP3b "nuclear factor Y, subunit B2", nuclear factor Y, subunit B2 (.1) AT1G21970 62 / 5e-12 CCAAT AtLEC1, NF-YB9, EMB212, LEC1 NUCLEAR FACTOR Y, SUBUNIT B9, LEAFY COTYLEDON 1, EMBRYO DEFECTIVE 212, Histone superfamily protein (.1) AT2G13570 57 / 2e-10 CCAAT NF-YB7 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009614 [exp] 305 / 2e-107 AT5G23090 269 / 2e-93 "nuclear factor Y, subunit B13", nuclear factor Y, subunit B13 (.1.2.3.4) Lus10027242 [exp] 265 / 2e-92 AT5G23090 267 / 3e-93 "nuclear factor Y, subunit B13", nuclear factor Y, subunit B13 (.1.2.3.4) Lus10038952 [exp] 259 / 9e-90 AT5G23090 265 / 2e-92 "nuclear factor Y, subunit B13", nuclear factor Y, subunit B13 (.1.2.3.4) Lus10003909 [exp] 70 / 9e-15 AT5G47670 221 / 1e-72 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Lus10015058 [exp] 68 / 2e-14 AT2G37060 238 / 4e-81 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Lus10001914 [exp] 69 / 3e-14 AT5G47670 218 / 2e-71 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Lus10023484 [exp] 67 / 3e-14 AT2G37060 211 / 9e-71 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Lus10008980 [exp] 67 / 2e-13 AT5G47670 168 / 6e-52 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Lus10001177 [exp] 65 / 4e-13 AT4G14540 225 / 9e-76 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G052800 [exp] 231 / 1e-78 AT5G23090 250 / 1e-86 "nuclear factor Y, subunit B13", nuclear factor Y, subunit B13 (.1.2.3.4) Potri.012G058200 [exp] 224 / 7e-76 AT5G23090 239 / 5e-82 "nuclear factor Y, subunit B13", nuclear factor Y, subunit B13 (.1.2.3.4) Potri.016G005600 [exp] 71 / 2e-15 AT5G47670 216 / 6e-71 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Potri.008G044800 [exp] 70 / 2e-15 AT2G37060 245 / 3e-84 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.010G216600 [exp] 69 / 6e-15 AT2G37060 236 / 2e-80 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.016G085000 [exp] 66 / 1e-13 AT3G53340 247 / 1e-84 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) Potri.006G005000 [exp] 66 / 2e-13 AT5G47670 216 / 7e-71 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Potri.006G005500 [exp] 65 / 3e-13 AT4G14540 208 / 2e-69 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.016G006100 [exp] 64 / 6e-13 AT4G14540 212 / 8e-71 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.014G167800 [exp] 64 / 6e-13 AT4G14540 221 / 1e-74 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00808 [flax] [poplar] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Lus10000864 pacid=23158803 polypeptide=Lus10000864 locus=Lus10000864.g ID=Lus10000864.BGIv1.0 annot-version=v1.0 ATGCCTCCTCCTCCTACTCCGCCTCAGCTTCCCATTCCGCTTGATCGCTATTCCCAACGACCCACCAGCTCCCGCAGCTCGGATCCTGACCATCCCAGAC TCACAACTATGACCAAAATCATTAAAGAGATGTTGCCTCCAGATGTTCGTGTCGCACGTGATACTCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTCAT AAATCTTATATCATCAGAGTCTAACGAAGTATGTAGCAAAGAGGATAAGCGAACCATTGCACCTGAGCATGTTCTCAAGGCTCTTGAGGTTCTTGGTTTT GGAGAGTACATTGAGGAGGTATACACAGCTTATGAGCAACACAAGCTCGAGACAATGCAAGACACTCTAAAAGTCGGGAAGTGGAGTGGGACGGTGATGA CAGAGGAGGAAGCAGCGGCCGAGCAACAGAGAATGTTTGCGGAGGCTCGTGCAAGAATGAACGGCGGTGTCCCTGCCCCGAAGCAACCGGAGGACGACAG AAGCTTACAGAGCTAA
AA sequence Show only first row Show all	>Lus10000864 pacid=23158803 polypeptide=Lus10000864 locus=Lus10000864.g ID=Lus10000864.BGIv1.0 annot-version=v1.0 MPPPPTPPQLPIPLDRYSQRPTSSRSSDPDHPRLTTMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLISSESNEVCSKEDKRTIAPEHVLKALEVLGF GEYIEEVYTAYEQHKLETMQDTLKVGKWSGTVMTEEEAAAEQQRMFAEARARMNGGVPAPKQPEDDRSLQS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10000864 [exp]	0	1
AT1G55000			peptidoglycan-binding LysM dom...		Lus10004477 [exp]	2.0	0.8576
AT5G61670			unknown protein		Lus10016713 [exp]	6.3	0.8421
AT3G25570			Adenosylmethionine decarboxyla...		Lus10019146 [exp]	6.7	0.8413
AT2G36970			UDP-Glycosyltransferase superf...		Lus10021438 [exp]	7.5	0.8103
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Lus10005908 [exp]	9.8	0.8329
AT1G80940			unknown protein		Lus10024095 [exp]	9.8	0.7937
AT1G01230			ORMDL family protein (.1)		Lus10005980 [exp]	12.2	0.8279
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Lus10042995 [exp]	15.4	0.7714
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10018153 [exp]	15.9	0.7868
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Lus10008089 [exp]	16.6	0.7819

Compare expression of checked genes

Lus10000864 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.