Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27900 1099 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009613 [exp] 1739 / 0 AT2G27900 1331 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G002900 [exp] 1212 / 0 AT2G27900 1333 / 0.0 unknown protein Potri.001G212600 [exp] 1210 / 0 AT2G27900 1301 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF10475 [flax] [poplar] Vps54_N Vacuolar-sorting protein 54, of GARP complex CL0295 [flax] [poplar] PF10474 [flax] [poplar] DUF2451 Protein of unknown function C-terminus (DUF2451)
Representative CDS sequence Show only first row Show all	>Lus10000865 pacid=23158798 polypeptide=Lus10000865 locus=Lus10000865.g ID=Lus10000865.BGIv1.0 annot-version=v1.0 ATGCAGCCGAATCCGTTCCCATTCGGAAACGTGCTTGTGAATCCGTTTCTTTTCAATGGAGATTTAGGCGAGCTCGGTGGAGCTGGATTAGGATTCGAGA GCTCAAGGGTTTTCTTCTTGCTTCCTTTACTCTTGTCCCAAGGAGGTGGAATGGATTTGTCCAAGGTCGGGGAAAAGCTTCTGAGCTCTGTACGGTCTGC CAGATCGCTTGGTTTACTCCCTCCCGTCTCTGATCGGCCTGAGGTTCCAGCCCGAGCAGCAGCGGCAGCAGCTGTTGCTCGTGCAATTGCATCATTGCCT CCCCATCAGCGCTATAGTCTTCCTTCAAGTTCTGAAGACTTATGCTCAATATATGGAAGCAGACCACAAGATCAAGTGGTGGAGGAGCTAGAAGAAGATT TTTACGAAGAGAACTTTGATCCGATTAGACATATACTGGAGATGATTTCTTCTGAAGAAACTGAAGTGACATATTTTGAGAAACAGGCTGCTCTTAGATT AGCCCAACTGGACAGGGTAGCAGAGTATTTATCTCATCATGTTATGAGAAATTACGAAGTAATGGTGAAGGGAATGAACTTGGTTAGGGAGTTAGAGAAA GACATAAAGATTGCTAATATCATCTGCATGGATATTATTCCAATATTAAATGAGCTTCGCCATGCTGTTGACATGCAAGCAGCACTTGAATCCCTTGTTG AAGAAGGAAACTACTGCAAGGCATTCCAGGTCCTATCTGAATACTTGCAGCTTTTAGATAGTTTATCAGAACTTTCAGCAGCACAAGAGATGAGCCGTGC AGTTGAGGTTTGGTTGGGCAGAACCCTTCAGAAACTAGATGCACTTCTTTTAGGAGTGTGCCAGGACTTCAAGGAGGAGAGTTATATTATTGTCAATTCT GAAACCAACTTAAGTCTTCACGGGATTTCTGGGAAAGACAAACACCATATGGTAGTTGATGCTTATGCATTAATTGGTGATGTCTCTGGTCTTGCCGAGA AGATACAAAGTTTCTTCATGCAAGAAGTTCTCTCAGAAACCCATTCAGTGCTGAAGAATGTTGTATTTGAGGTATCTTTACTGCCGTTACATGTTTCAAA ACTTACCTACAGTGATCTATGCCTTCAGATACCAGAATCCAAGTTTAGACAGTGTCTGTTGAGAACCCTTGCCGCCTTGTTTAAGTTGATGTGCTCATAT CACGAAATCATGAGCTTTCAGATGGATGACAAGGTAGTCAAAGTCCTATCTGTTTACCCTAATTTAGTATATCAGACTTCAACCGTGAACCATCAGCAAG GTGATCGGTCCGAGCATGGCACTGACTCCCAAAGAACGCATAATTCACAAGTTGTTCCCGAGTCTTCTCATTTTGTAGAGAGACTCTCTGATCTAACTCC AGCTGAGGAATCCATTTCTGGTTCTTCCGTTGGTGCAACAGGATCCACAGATCCCGTGGCTCCAGATAAGATTGTTAACGAGGGAAGGAATGATAGTTCT GAAGCTTCAAGTAGTGGATCCCCTTGGTATCAGCTGCGGAAAGATGCTACAACATGTGTTTCTCAAACCCTTCAAAGAGGAAGGAAAAATATTTGGCAAC TGACAACGAGTCGAGTATTGGTATTGCTCTCCTCTGGGGCAGTAGGTTCAATGAGCATTCACCAGTTTTTGAAAAATTATGAAGACCTAAATATGTTTAT CTTAGCCGGGGAAGCATTTAGCGGGGTCGAAGCAGTTGAGTTCAGACAAAAGTTGAAGGGTGTCTGTGAAAATTATTTTGCAGCCTTCCACCGGCAGAAT ATATATGCACTCAAAATGGTTTTAGAGAAGGAAACTTGGATGAAATTGCCTCCAGAAACAGCACAAGTAGTGAGTTTTGCTGGCCTAGTTGGTGATGGAG CACCAGTCATCACTCAGTCTGGGAGGAAGTCAGCTGGATCTCAGTTGCACCTATCTGCTAAATCCATGAACGCTGTTGATGTCAATTCAAGGAAGAGTGG ATTTACAAGCTGGCTTAAAAGTGGAAACCCATTTGCTGTCAAAGTTATGCAGACTGCTAGAGATGGTCTTGATTCTCCCCATGTCAATGGAAGTGGTGGG GAATTTGGATCACATCTCAATAATCATGCAAATGGAACTCAGGTTTCTGAAGATGAAAATGAAGATCTACTCGCAGACTTTATTGATGAAGATAGTCAAC TCCCTAGTCGAAAACTAGGTCTTCCAAGGACCAACTCAGTACACTGGAAAAATGATGACGCAACAGCACAGACTGGATCTTCTCTTTGTCTATTAAGGTC GATGGATAAATATGCCAGGCTCATGCAGAAACTAGAAATAGTTAATGTTGAATTTTTTAAGGGAATTTGTCAGCTCTTTGAGGTGTTTTACTATTTTGTT TTTGACATATTTGGTGGACAAAATTCTTCCTCGACTGGAAAACATTCTCCTGACGTCCTAAATCGTAAGTGTTGTTATTCTTTCTGCCTCTATGTTTCTC TTGTTCAACATCTCCCTGTCCGGCTTAGTCATGGTTTGATGGGAACTTCTATTTATGCACTTATGACACACTCAGATCGTCTGAAGACTGCCTTATCAAA GATATCTCAAGATTGTGATCAGTGGATAAAGCCCCAGACTATTCACTCATCATCATCACTGCCTACCTCAAGTACATATACGCACACAGATATTGTTCCT AGCTGTCCGCCAAATCATTCCCCAGCTTCTCTCAGTCTCAAGGAAAGATGTGCAGGTGCCGACACATTATCAGTTGTTGCTCGAATACTGCATAGATCTA AAGCCCATCTCCAGTCAATGCTTCTACAAAAGAATCCAACATTAGTTGAGGATTTCTATGCAAACCTGGTGGATTCTGTACCAGATCTTACTGAGCACAT ACATAGAACAACTGCAAGACTTTTGCTTCACATTGATGGATATGTCGATAGGATTGCTGCTGCGAAATGGGAAGTAAAAGAGCTTGGACTTGAGCATAAT GGGTACGTCGATTTATTGCTGGGAGAGTTCAAGCACTATAAAACACGGCTTGCTCATGGAGGAATTCACAAAGAGGCGCAAGACCTGCTGCTAGAATACG GTGTAGAAATCATTGCCGCCACTCTCATCGAAGGGCTCTCGAGAGTGAAGAAATGCACTGACGAAGGACGTGCTCTAATGTCGTTGGATCTTCAGGTTCA TCTCTCAAATGTTGCATCGAATGTCTCAGTCAGGGCTCGTAGCTCCTTCTTAACTCCACCTTGGCTTTGCTGTCTTAACCTCGTCTTACCACCAGGTGCT GATAAATGGGCTACAACATTTTGTTCCGGGGAACGTGAAACCAAAGATGCGGACAGTAGAAACTTTCATCAAGGTAATGATGCTATACCATCGTTGCTTC TTATAGCTTTCATATCACAGAAGATCTTCCCCAGCAGAAATCATTTAACTATTTTCGCTTTGTCCTTTGTGCAGGCTTACTATCTTCCAGAAACCGAGTA CGTCCATTGGGGTCGCGCTCATCCGGAGTACACAAAAAGCCAGGTGGTTGGACTGGTGAACTTGGTGGCCACCATGAAAGGCTGGAAGAGGAAAACCAGG CTGGAAGCCATCGAAAAGATCGAGTCAAGCTGCTAA
AA sequence Show only first row Show all	>Lus10000865 pacid=23158798 polypeptide=Lus10000865 locus=Lus10000865.g ID=Lus10000865.BGIv1.0 annot-version=v1.0 MQPNPFPFGNVLVNPFLFNGDLGELGGAGLGFESSRVFFLLPLLLSQGGGMDLSKVGEKLLSSVRSARSLGLLPPVSDRPEVPARAAAAAAVARAIASLP PHQRYSLPSSSEDLCSIYGSRPQDQVVEELEEDFYEENFDPIRHILEMISSEETEVTYFEKQAALRLAQLDRVAEYLSHHVMRNYEVMVKGMNLVRELEK DIKIANIICMDIIPILNELRHAVDMQAALESLVEEGNYCKAFQVLSEYLQLLDSLSELSAAQEMSRAVEVWLGRTLQKLDALLLGVCQDFKEESYIIVNS ETNLSLHGISGKDKHHMVVDAYALIGDVSGLAEKIQSFFMQEVLSETHSVLKNVVFEVSLLPLHVSKLTYSDLCLQIPESKFRQCLLRTLAALFKLMCSY HEIMSFQMDDKVVKVLSVYPNLVYQTSTVNHQQGDRSEHGTDSQRTHNSQVVPESSHFVERLSDLTPAEESISGSSVGATGSTDPVAPDKIVNEGRNDSS EASSSGSPWYQLRKDATTCVSQTLQRGRKNIWQLTTSRVLVLLSSGAVGSMSIHQFLKNYEDLNMFILAGEAFSGVEAVEFRQKLKGVCENYFAAFHRQN IYALKMVLEKETWMKLPPETAQVVSFAGLVGDGAPVITQSGRKSAGSQLHLSAKSMNAVDVNSRKSGFTSWLKSGNPFAVKVMQTARDGLDSPHVNGSGG EFGSHLNNHANGTQVSEDENEDLLADFIDEDSQLPSRKLGLPRTNSVHWKNDDATAQTGSSLCLLRSMDKYARLMQKLEIVNVEFFKGICQLFEVFYYFV FDIFGGQNSSSTGKHSPDVLNRKCCYSFCLYVSLVQHLPVRLSHGLMGTSIYALMTHSDRLKTALSKISQDCDQWIKPQTIHSSSSLPTSSTYTHTDIVP SCPPNHSPASLSLKERCAGADTLSVVARILHRSKAHLQSMLLQKNPTLVEDFYANLVDSVPDLTEHIHRTTARLLLHIDGYVDRIAAAKWEVKELGLEHN GYVDLLLGEFKHYKTRLAHGGIHKEAQDLLLEYGVEIIAATLIEGLSRVKKCTDEGRALMSLDLQVHLSNVASNVSVRARSSFLTPPWLCCLNLVLPPGA DKWATTFCSGERETKDADSRNFHQGNDAIPSLLLIAFISQKIFPSRNHLTIFALSFVQAYYLPETEYVHWGRAHPEYTKSQVVGLVNLVATMKGWKRKTR LEAIEKIESSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27900			unknown protein		Lus10000865 [exp]	0	1
AT3G50590			Transducin/WD40 repeat-like su...		Lus10009343 [exp]	4.5	0.8955
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10023394 [exp]	5.3	0.8988
AT5G28350			Quinoprotein amine dehydrogena...		Lus10005119 [exp]	8.5	0.8683
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10037962 [exp]	12.0	0.8856
AT5G06970			Protein of unknown function (D...		Lus10026160 [exp]	12.0	0.8769
AT3G47890			Ubiquitin carboxyl-terminal hy...		Lus10042186 [exp]	13.2	0.8742
AT2G45540			WD-40 repeat family protein / ...		Lus10015858 [exp]	14.1	0.8850
AT5G27970			ARM repeat superfamily protein...		Lus10000943 [exp]	15.2	0.8805
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Lus10037708 [exp]	19.2	0.8523
AT2G07360			SH3 domain-containing protein ...		Lus10027588 [exp]	22.6	0.8498

Compare expression of checked genes

Lus10000865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.