Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23080 768 / 0 TGH TOUGH, SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) AT4G31200 45 / 0.0002 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009612 [exp] 1444 / 0 AT5G23080 835 / 0.0 TOUGH, SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) Lus10016927 [exp] 53 / 9e-07 AT4G31200 587 / 0.0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3) Lus10008260 [exp] 52 / 2e-06 AT4G31200 586 / 0.0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G058100 [exp] 904 / 0 AT5G23080 837 / 0.0 TOUGH, SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) Potri.006G279800 [exp] 53 / 7e-07 AT4G31200 579 / 0.0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3) Potri.018G002000 [exp] 52 / 1e-06 AT4G31200 620 / 0.0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01805 [flax] [poplar] Surp Surp module PF07713 [flax] [poplar] DUF1604 Protein of unknown function (DUF1604)
Representative CDS sequence Show only first row Show all	>Lus10000866 pacid=23158802 polypeptide=Lus10000866 locus=Lus10000866.g ID=Lus10000866.BGIv1.0 annot-version=v1.0 ATGGAAGAGACCGATCTCGTGTTCTACGGGACGCCGATTGAGCGAGAGGAGGATCCTACCAGCCGTAAGAAGAAAGCCGTTGCTGAAGCGTCGGGTCAGC TCCGGACCCTGCCTTCTTGGAAGCAGGAGGTGAGAGATGAAGAGGGGAGGAGAAGATTCCATGGAGCGTTTACTGGTGGATACTCAGCTGGTTATTATAA TACTGTGGGATCAAAAGAAGGGTGGGCTCCTCAATCGTTTACTTCTTCGAGGAAAAGCAGAGCAGAAGTTAAACAGCAGGACATCTTGAACTTTCTGGAT GAAGATGAGAAAGCGGATTTGGAGGGTCGATCCCTTGGAACTTCATCACAGTTTGATACATTTGGATTTACCGCTTCTGAAGTCGCTCGTAAACTAGCTG ATAAAGAGCAAGATAAAAGACCATCTGCTATTCCTGGTCCCGTCCCTGATGAATTGGTGCTTCCAGCTTCTGAGTCTATTGGGGTAAAGCTGCTACTAAA GATGGGATGGAGGCATGGTCGTTCAATTAAGGATTCATCTGCAGATTCATTATATGAAGCTCGTCGAAAAGCCAGAAAGGCTTTCCTGGCATTATCTTCA AGTGATGATGCTAAACCTCGTATTGAGCACAATGAATATGATCAGAATGACCATGGAGACGATCAGCACCCTGTCAATGATGATAATTTGTCTTCTAAGA AAACACCTTTGTATTCACTTGGGCCGAAACAGGACTCATACGGTTTGGGCTACGACCCTTATAAGCATGCTCCTGAGTTCCGAGCAGGAAAATCTGCACC TGGTTTTGGCATTGGAGCATTGGAGGAATATGATGTTGAAGACGAGGATGTCTATAATAGCGCTGCTTATGAATTTGAAAGTACCATTGTCCAAGAACTA GAAGAGTCCTCAAAAGCAACTGTTGCAGACCCTAAGCATAGATTGACCTGGAAAGAGAAAGGTGTTCTCCCTGGTTTCAAAGTCGCATCTGTTTCTGATT ATCAAATGGAAAGATTTAATGCGCCAGAAGTGCCTACGGATTTTGTTCCACGCCACAAGTTCGCCGGTCCTCTGAAAGCTGAAGATAAGGCTGCTCTTCC TCCTCCAGCTGAGGTTCCACCGCCTGAAGATAGTAATCAAAAAGTCTTGATTGATGGTGTGGCAACGTTGGTTGCTCGATGTGGAAAATTGTTTGAAGAT CTCTCAAGAGACAAGAATCAGTCAAATCCGTCATTTGCCTTCCTCGTGGGAGGAAAGGGCCATGACTACTACGAAAGGAAATTATGGGAGGAGCAACAAA AGCATACAGATCATAAGAAGCTGCCTTTGGATAATAAATCTTCTCTGAGCATGCCGAAGATGAATGCCGAGAATCGCGGCAAGATATTAGGTGAAAGGCC TTTGGAAAGAAGCTCGGGCAACCTTGCCGCACAAGAAGTCAACCTTCAATCCAACCTTTTAGATACCTTCACGAAACCCTTAGTGTTTAGTGAGCTACCT GAAGTAGTGAAACCCTTCAAAGATGACCCCGCAAAGCAGGACAGATTTCAGCAGTTTCTCAAGCAGAAGTACCAAGGAGGACTCCGTTCTGCAGATTCGG GCGGATCAAGCTATATATCAGAAGCAGTTCGTGCTCAGGAAAGATTAGATTTCGAGCTTGCAGCCGATGCACTAGAGAAGGCAAATCGGGGCCACGAAAA CAAATTCTCGGCACAGATGTCTATGGATTTCTTCACTAATGCTGGCATGCAATTCACTTCTGCCGGTGTTGAGCAGGTTAATATTACTCAAGACAAAGAT TTAGCAATGAAGGGAATGTACCCGAAAAGGGAAGAGTATCAATGGCGTCCTGCACCTGTTCTTTGCAAGCGATTTTATCTAGTTGATCCTTATATGGGAA AGCTACCACCGCCTCCACGAATGCGAAGCAAGATCGATTCGCTCGTATTCAAATCAGAGGTCATCCCAGTTCCCAGGATCCTAGACAAACCGGGTGAAAA CCAGAATCGCTCTGCAGGTCTGCAGTCAAGTGATCAGGCAATGAGAGATGGTCCAGCTGACGAAGAACCTGAAGTCGAAGTTGAAGTCGAAAACGTTGAA AGGCCAGTTGACCTCTACAAGGCTATTTTCTCAGATGATTCAGACGAGGAGGCTGAAGCATCAAAACCTAGCAAGTTCGAAGATCCAGAGAAGAAGATGG AAGTGGCTAACGCAACATTGAATCGCTTAATGGCCGGCGATTTTCTCGAATCATTAGGCAAAGAACTGGGGCTGGAAGTTCCTCCTGATCTACCTTACTC TCACAACAAAGCAAAGGCATCAGTTCCTGAGAAGGAAGCCGCCACTTCGATTGCAGATGATCGAAGCAACCAAAAGAACGAACCTCTGAACGTTGCACCA ATTGATCAATCTCCACCTCGAAGTAAACCATTTTCGACAACTGAAGAAGGTAAGAGACACAGATCACCTTCGACAAGCCATCGGAAACGGAGAGAGAGCA CGTCCTCGGAAGAAGAACTAGATAGAAGTTCCTCTAGGTACCATCATCGTCGCTATGATGACAGCAGCAGCGAGTCGTACAGCGAATCATCAGGCGACGC CCGAATCAGACACAGGTCTAAGTCGAAAGGAAGGAGGAAAGAGTCGTCCTCGTCCAAAGACAAGAAGAGCAGCGGCAGCAGTAGCCGAAAGCATTCGAGG CATCGCCATCATCGTAGCAGCAAATCCTCTTCTTCCCGTCACCATCATTCCGGGGAAGGCAAACGAGAGAAGCGGAAGCAAAGGGATTGA
AA sequence Show only first row Show all	>Lus10000866 pacid=23158802 polypeptide=Lus10000866 locus=Lus10000866.g ID=Lus10000866.BGIv1.0 annot-version=v1.0 MEETDLVFYGTPIEREEDPTSRKKKAVAEASGQLRTLPSWKQEVRDEEGRRRFHGAFTGGYSAGYYNTVGSKEGWAPQSFTSSRKSRAEVKQQDILNFLD EDEKADLEGRSLGTSSQFDTFGFTASEVARKLADKEQDKRPSAIPGPVPDELVLPASESIGVKLLLKMGWRHGRSIKDSSADSLYEARRKARKAFLALSS SDDAKPRIEHNEYDQNDHGDDQHPVNDDNLSSKKTPLYSLGPKQDSYGLGYDPYKHAPEFRAGKSAPGFGIGALEEYDVEDEDVYNSAAYEFESTIVQEL EESSKATVADPKHRLTWKEKGVLPGFKVASVSDYQMERFNAPEVPTDFVPRHKFAGPLKAEDKAALPPPAEVPPPEDSNQKVLIDGVATLVARCGKLFED LSRDKNQSNPSFAFLVGGKGHDYYERKLWEEQQKHTDHKKLPLDNKSSLSMPKMNAENRGKILGERPLERSSGNLAAQEVNLQSNLLDTFTKPLVFSELP EVVKPFKDDPAKQDRFQQFLKQKYQGGLRSADSGGSSYISEAVRAQERLDFELAADALEKANRGHENKFSAQMSMDFFTNAGMQFTSAGVEQVNITQDKD LAMKGMYPKREEYQWRPAPVLCKRFYLVDPYMGKLPPPPRMRSKIDSLVFKSEVIPVPRILDKPGENQNRSAGLQSSDQAMRDGPADEEPEVEVEVENVE RPVDLYKAIFSDDSDEEAEASKPSKFEDPEKKMEVANATLNRLMAGDFLESLGKELGLEVPPDLPYSHNKAKASVPEKEAATSIADDRSNQKNEPLNVAP IDQSPPRSKPFSTTEEGKRHRSPSTSHRKRRESTSSEEELDRSSSRYHHRRYDDSSSESYSESSGDARIRHRSKSKGRRKESSSSKDKKSSGSSSRKHSR HRHHRSSKSSSSRHHHSGEGKREKRKQRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23080		TGH	TOUGH, SWAP (Suppressor-of-Whi...		Lus10000866 [exp]	0	1
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Lus10027289 [exp]	2.4	0.8721
AT3G19780			unknown protein		Lus10040970 [exp]	2.4	0.8564
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10037223 [exp]	2.8	0.8737
AT5G51540			Zincin-like metalloproteases f...		Lus10031715 [exp]	5.5	0.8266
AT5G25480		AtDNMT2, DNMT2	DNA METHYLTRANSFERASE 2, DNA m...		Lus10020155 [exp]	6.9	0.8136
AT1G04790			RING/U-box superfamily protein...		Lus10011747 [exp]	7.0	0.8313
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Lus10038994 [exp]	7.2	0.8131
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10008297 [exp]	7.5	0.8204
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Lus10034282 [exp]	8.4	0.8431
AT5G08110			nucleic acid binding;ATP-depen...		Lus10007978 [exp]	10.4	0.8222

Compare expression of checked genes

Lus10000866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.