Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23040 322 / 1e-111 CDF1 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) AT3G51140 117 / 3e-31 Protein of unknown function (DUF3353) (.1) AT2G20920 48 / 2e-06 Protein of unknown function (DUF3353) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038965 [exp] 367 / 4e-129 AT5G23040 361 / 3e-127 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Lus10009608 [exp] 360 / 1e-127 AT5G23040 333 / 3e-117 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Lus10027257 [exp] 341 / 1e-110 AT5G23050 1044 / 0.0 acyl-activating enzyme 17 (.1) Lus10041816 [exp] 123 / 4e-33 AT3G51140 328 / 3e-112 Protein of unknown function (DUF3353) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G057700 [exp] 338 / 4e-118 AT5G23040 316 / 3e-109 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Potri.007G015600 [exp] 129 / 1e-35 AT3G51140 331 / 1e-114 Protein of unknown function (DUF3353) (.1) Potri.004G177300 [exp] 54 / 3e-08 AT2G20920 306 / 2e-104 Protein of unknown function (DUF3353) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11833 [flax] [poplar] CPP1-like Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Representative CDS sequence Show only first row Show all	>Lus10000868 pacid=23158797 polypeptide=Lus10000868 locus=Lus10000868.g ID=Lus10000868.BGIv1.0 annot-version=v1.0 ATGACTTCTCTCCTCCTCTCCAACCTTAATTTCTCTGCTCCGTTCCTCGCCCCAACACTTAATGGTTTACAGAAGAAGAAGAAGAACCCAAAGTGTTCAT CTTGCAGTCCGCTTCCGAATCGCTCTAGAAAGCTTACAGCCGTCAAATGTGCTTGGGATAGTCCTTACGATTACGAAGGATACACGCAGAAGTTCCCACG AATGAAGGTTTGGGATCCTTACAAACGTCTAGGAGTGAGTCCTGACGCATCCGAGGAGGAAGTTTGGGACGCACGAAATTTCCTCAGGGAACAGTATGCA GGGCATGAGAGCAGCGAGGAATCAATCGAGGGAGCTTTCGAGAAGCTCTTGATGACGAGCTTCAAGCAACGTAAGAAGACGAAGATCAACCTGAAAACCA AGCTGAAGAAGCAGGTTGATGAGTCTCCTGCTTGGGTGAAGAACTTGCTCGGGCTCGTGGAAATGCCTCCCATGGACATCATTTTCAGAAGACTGTTCCT TTTCGCGTTCATGGGCGGCTGGAGCATCATGAATTCTGCAGATGGTGGACCTGCTTTCCAGGTAGCAGTCTCTTTGGCTGCGTGCATATATTTCCTCAAT GAGAAGACAAAGAGCCTGGGCAGAGCCTTCATCATTGGGCTTGGAGCTCTTGCAACTGGGTGGGTATGCGGCTCAGTGGTGGTTCCTCTGGTTCCAACTT TCCTCATTCACCCTACTTGGACTCTCGAGCTCATGACCTCGTTGGTAGCTTACTTTTTCTTGTTCCTCGGCTGCACTTTCTTCAAATAA
AA sequence Show only first row Show all	>Lus10000868 pacid=23158797 polypeptide=Lus10000868 locus=Lus10000868.g ID=Lus10000868.BGIv1.0 annot-version=v1.0 MTSLLLSNLNFSAPFLAPTLNGLQKKKKNPKCSSCSPLPNRSRKLTAVKCAWDSPYDYEGYTQKFPRMKVWDPYKRLGVSPDASEEEVWDARNFLREQYA GHESSEESIEGAFEKLLMTSFKQRKKTKINLKTKLKKQVDESPAWVKNLLGLVEMPPMDIIFRRLFLFAFMGGWSIMNSADGGPAFQVAVSLAACIYFLN EKTKSLGRAFIIGLGALATGWVCGSVVVPLVPTFLIHPTWTLELMTSLVAYFFLFLGCTFFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10000868 [exp]	0	1
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10009608 [exp]	1.0	0.8887
AT2G36730			Pentatricopeptide repeat (PPR)...		Lus10004373 [exp]	2.0	0.8759
AT1G06475			unknown protein		Lus10015269 [exp]	3.9	0.8709
AT1G02370			Tetratricopeptide repeat (TPR)...		Lus10021053 [exp]	5.0	0.8486
AT2G37320			Tetratricopeptide repeat (TPR)...		Lus10009070 [exp]	5.3	0.8703
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Lus10034664 [exp]	6.0	0.8356
AT1G62260		MEF9	mitochondrial editing factor 9...		Lus10012514 [exp]	7.5	0.8421
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10003325 [exp]	8.5	0.8433
AT3G57070			Glutaredoxin family protein (....		Lus10018025 [exp]	8.9	0.8334
AT1G03540			Pentatricopeptide repeat (PPR-...		Lus10033713 [exp]	10.8	0.8258

Compare expression of checked genes

Lus10000868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.