Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28050 95 / 5e-23 TET7 tetraspanin7 (.1) AT2G23810 94 / 1e-22 TET8 tetraspanin8 (.1) AT4G30430 91 / 2e-21 TET9 tetraspanin9 (.1) AT2G19580 87 / 5e-20 TET2 tetraspanin2 (.1) AT1G18520 86 / 7e-20 TET11 tetraspanin11 (.1) AT5G23030 82 / 2e-18 TET12 tetraspanin12 (.1) AT3G45600 81 / 7e-18 TET3 tetraspanin3 (.1) AT5G60220 74 / 4e-15 TET4 tetraspanin4 (.1) AT3G12090 73 / 7e-15 TET6 tetraspanin6 (.1) AT5G46700 71 / 3e-14 TRN2, TET1 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009605 [exp] 313 / 7e-104 AT3G07840 317 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10008891 [exp] 105 / 5e-27 AT2G23810 377 / 5e-133 tetraspanin8 (.1) Lus10019965 [exp] 101 / 2e-25 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10023216 [exp] 99 / 1e-24 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10015494 [exp] 97 / 7e-24 AT2G23810 370 / 2e-130 tetraspanin8 (.1) Lus10036958 [exp] 95 / 5e-22 AT1G16290 561 / 0.0 unknown protein Lus10008563 [exp] 91 / 1e-21 AT2G19580 411 / 1e-146 tetraspanin2 (.1) Lus10038964 [exp] 91 / 2e-21 AT4G28050 203 / 2e-64 tetraspanin7 (.1) Lus10009607 [exp] 91 / 3e-21 AT1G18520 217 / 5e-70 tetraspanin11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G055700 [exp] 111 / 4e-29 AT1G18520 196 / 6e-62 tetraspanin11 (.1) Potri.015G055900 [exp] 96 / 2e-23 AT1G18520 163 / 3e-49 tetraspanin11 (.1) Potri.018G099800 [exp] 95 / 7e-23 AT2G23810 322 / 3e-111 tetraspanin8 (.1) Potri.006G177900 [exp] 93 / 3e-22 AT2G23810 317 / 4e-109 tetraspanin8 (.1) Potri.003G093000 [exp] 87 / 5e-20 AT5G46700 369 / 4e-130 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.001G141400 [exp] 86 / 9e-20 AT5G46700 367 / 3e-129 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.006G150400 [exp] 83 / 1e-18 AT2G19580 367 / 5e-129 tetraspanin2 (.1) Potri.001G129300 [exp] 81 / 6e-18 AT4G28050 162 / 1e-48 tetraspanin7 (.1) Potri.009G015100 [exp] 79 / 3e-17 AT3G45600 388 / 7e-137 tetraspanin3 (.1) Potri.008G041600 [exp] 77 / 2e-16 AT3G12090 397 / 2e-140 tetraspanin6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [flax] [poplar] Tetraspannin PF00335 [flax] [poplar] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Lus10000870 pacid=23158806 polypeptide=Lus10000870 locus=Lus10000870.g ID=Lus10000870.BGIv1.0 annot-version=v1.0 ATGGCGCCTCGTCCAAGCAACCTCGTCCTAACGATCCTCAACACCCTAACCCTCCTCGCCGGCCTCACCCTCTTCGCCACCGGAATCTACCTCTCTGTAA CCTCCTCCTCCTCCTCCGGCCCACGCTGCCAGACCTTCCTCCGAAACTCGCTCCTCATCTTGGGCTCCTTCGTCCTCCTCGTCTCTGTCCTCGGCCTCCT TGGTTCGAGCAGGAGGAACAATGTCTTCCTCTGGCTCTACACAGTCCTCCTGCTCCTCCTCGTGGTCGGAGCCGTGGGTTTCACAGTGTTCATGCTCGTT GTGACCAAGCAGCGCCATGGTGGCGCCACGGTAGGCGATTTTTCCGGGTGGATGCGTCACCATTTCGCCAAGGTGCAGAATTGGGACGTTGTTAGGAGTT GCCTTGTTGACGGGAAAGTTTGTAACGTCGCGGGTGGGAAGAAAGCTCGCAACTCTGCATTAATGATAGGCTGCTGCAAACCGCCGCCGGGATGCTCACC GGACAATGCCAACGAAACCACGACAGCGGCGGCAGGGAGCAAAGAAAAGCAGGGTGATTCCGGAAATGGAGAGTGCGGGAAATGGAGCTCCGACCCGAAG AAGATGTGCTACAACTGCGAGAGATGCAAGGCCGGTTTCCTGGGCGAAGTGAGGAAGCAATGGAGGGCGGCCGGAGTGGCTCTTCTCTGCTTCGTCGGGT TCATGGTGGTAGTGCTCTGTATGGCTTGGTGCGCCATCAACAACAACAAGTTCGACTCCGAAGTTTCCAGCCCTTGA
AA sequence Show only first row Show all	>Lus10000870 pacid=23158806 polypeptide=Lus10000870 locus=Lus10000870.g ID=Lus10000870.BGIv1.0 annot-version=v1.0 MAPRPSNLVLTILNTLTLLAGLTLFATGIYLSVTSSSSSGPRCQTFLRNSLLILGSFVLLVSVLGLLGSSRRNNVFLWLYTVLLLLLVVGAVGFTVFMLV VTKQRHGGATVGDFSGWMRHHFAKVQNWDVVRSCLVDGKVCNVAGGKKARNSALMIGCCKPPPGCSPDNANETTTAAAGSKEKQGDSGNGECGKWSSDPK KMCYNCERCKAGFLGEVRKQWRAAGVALLCFVGFMVVVLCMAWCAINNNKFDSEVSSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23810		TET8	tetraspanin8 (.1)		Lus10000870 [exp]	0	1

Compare expression of checked genes

Lus10000870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.