Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16300 629 / 0 GAPCP-2 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) AT1G79530 626 / 0 GAPCP-1 glyceraldehyde-3-phosphate dehydrogenase of plastid 1 (.1) AT3G04120 454 / 5e-160 GAPC1, GAPC-1, GAPC glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) AT1G13440 452 / 2e-159 GAPC2, GAPC-2 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) AT1G42970 279 / 6e-90 GAPB glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) AT1G12900 258 / 4e-82 GAPA-2 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (.1.2.3.4) AT3G26650 246 / 9e-78 GAPA-1, GAPA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009602 [exp] 751 / 0 AT1G16300 694 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Lus10022332 [exp] 460 / 3e-162 AT1G13440 632 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Lus10015826 [exp] 458 / 2e-161 AT3G04120 606 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10014603 [exp] 454 / 5e-160 AT3G04120 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10032071 [exp] 454 / 5e-160 AT3G04120 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10011375 [exp] 454 / 7e-160 AT3G04120 593 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10006435 [exp] 454 / 7e-160 AT3G04120 593 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10036976 [exp] 443 / 5e-155 AT3G04120 592 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10016033 [exp] 266 / 1e-84 AT1G42970 758 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G083900 [exp] 661 / 0 AT1G16300 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Potri.010G172400 [exp] 654 / 0 AT1G16300 618 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Potri.001G335800 [exp] 457 / 4e-161 AT3G04120 585 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.010G055400 [exp] 456 / 7e-161 AT3G04120 592 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.012G094100 [exp] 456 / 1e-160 AT1G13440 580 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Potri.015G091400 [exp] 454 / 7e-160 AT1G13440 578 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Potri.008G179300 [exp] 442 / 4e-155 AT3G04120 573 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.002G007100 [exp] 268 / 6e-86 AT1G42970 690 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Potri.005G254100 [exp] 268 / 2e-85 AT1G42970 732 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Potri.002G220566 [exp] 247 / 6e-78 AT3G26650 614 / 0.0 GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00044 [flax] [poplar] Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CL0139 [flax] [poplar] GADPH_aa-bio_dh PF02800 [flax] [poplar] Gp_dh_C Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10000872 pacid=23158807 polypeptide=Lus10000872 locus=Lus10000872.g ID=Lus10000872.BGIv1.0 annot-version=v1.0 ATGGCCTTCTCCAGCCTCCTCAGATCTACCGCCGCCGCTGCTCCCCTCGCCGACGCAGCTTCTCGATCCGCGCTCACTCCTTCCCTCCCTTGCGATCGCT TCAAGGTTTCGAGCGTTGGCTTCTCTTCAAAGGCCGTCCCTATCTCAACATCGTCTTATTCCTTCCAGACACGCAGTGGGAGAAGTGTCCAGCCCATCAA GGCCACCGCTACTGAAGTTCCTCCAACTGTTCTGAGATCGAGGACTGCTGGGAAGACTAAGGTTGGGATCAACGGGTTTGGTCGTATTGGAAGATTGGTG CTCCGTATTGCTACATCTAGGGATGATATCGATGTGGTGGCAGTCAATGATCCCTTTATTGATGCTAAATACATGGCTTACATGTTGAAGTATGATTCTA CTCATGGGAATTTCAACGGGACCATCACTGTTTTGGATGAGTCTACATTGGAAATCAACGGCAAACAAATCAAAATTTCCAGCAAGAGGGACCCTGCAGA TATTCCATGGGGTGATTATGGAGCAGAATATGTTGTTGAATCTTCTGGAGTCTTCACAACTATCGACAAGGCTGCAGCTCACAAAAAGGGAGGTGCTACA AAGGTGGTCATATCAGCCCCCTCTGCTGATGCACCAATGTTTGTTGTTGGAGTTAATGAGCAGACATACCAGCCAAACATGGATGTTGTCTCTAATGCAA GCTGCACGACAAATTGTCTTGCTCCCCTTGCCAAGGTGGTTCATGAAGAATTTGGCATTCTTGAAGGGTTGATGACAACAGTTCATGCAACTACAGCTAC CCAAAAGACTGTCGATGGCCCATCAATGAAAGATTGGCGTGGTGGTCGTGGAGCTAGTCAGAATATCATTCCAAGTTCTACCGGTGCAGCGAAGGCTGTT GGAAAGGTACTTCCAGAGCTGAACGGAAAACTTACTGGCATGGCTTTCCGTGTCCCAACGCCTAATGTTTCTGTTGTGGACTTAACTTGTCGACTTGAGA AGAGTGCATCATACGATGATGTTAAAGCTGCTATTAAGTATGCATCTGAGGGACCATTGAAGGGCATTCTTGGATACACTGATGAGGATGTCGTTTCTAA TGATTTCATCGGCGACTCAAGGTCAAGCATATTCGATGCAAAGGCCGGGATAGGGTTGAGCAGTTCCTTCATGAAGCTCGTGTCGTGGTACGACAATGAG TGGGGTTACAGCAACCGAGTTCTGGACCTCATCGAGCACATGGCGTTGGTAGCTTCCCTGAAGTGA
AA sequence Show only first row Show all	>Lus10000872 pacid=23158807 polypeptide=Lus10000872 locus=Lus10000872.g ID=Lus10000872.BGIv1.0 annot-version=v1.0 MAFSSLLRSTAAAAPLADAASRSALTPSLPCDRFKVSSVGFSSKAVPISTSSYSFQTRSGRSVQPIKATATEVPPTVLRSRTAGKTKVGINGFGRIGRLV LRIATSRDDIDVVAVNDPFIDAKYMAYMLKYDSTHGNFNGTITVLDESTLEINGKQIKISSKRDPADIPWGDYGAEYVVESSGVFTTIDKAAAHKKGGAT KVVISAPSADAPMFVVGVNEQTYQPNMDVVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAV GKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYDDVKAAIKYASEGPLKGILGYTDEDVVSNDFIGDSRSSIFDAKAGIGLSSSFMKLVSWYDNE WGYSNRVLDLIEHMALVASLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Lus10000872 [exp]	0	1
AT4G27585			SPFH/Band 7/PHB domain-contain...		Lus10015597 [exp]	1.4	0.9720
AT3G63250		HMT-2, ATHMT-2 ...	HOMOCYSTEINE METHYLTRANSFERASE...		Lus10006901 [exp]	4.7	0.9510
AT1G72330		ALAAT2	alanine aminotransferase 2 (.1...		Lus10003935 [exp]	4.7	0.9587
AT5G50740			Heavy metal transport/detoxifi...		Lus10030514 [exp]	4.9	0.9527
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Lus10001555 [exp]	4.9	0.9426
AT1G48900			Signal recognition particle, S...		Lus10016213 [exp]	6.1	0.9379
AT3G53580			diaminopimelate epimerase fami...		Lus10025303 [exp]	6.3	0.9511
AT2G40800			unknown protein		Lus10030504 [exp]	7.3	0.9517
AT4G15080			DHHC-type zinc finger family p...		Lus10039043 [exp]	7.3	0.9420
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10032633 [exp]	7.5	0.9489

Compare expression of checked genes

Lus10000872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.