Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13010 1010 / 0 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT3G26560 348 / 1e-103 ATP-dependent RNA helicase, putative (.1) AT2G35340 300 / 8e-87 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT4G16680 290 / 1e-86 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G32490 298 / 2e-86 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT3G62310 286 / 4e-84 RNA helicase family protein (.1) AT2G47250 285 / 1e-83 RNA helicase family protein (.1) AT1G27900 278 / 1e-81 RNA helicase family protein (.1) AT1G26370 246 / 7e-70 RID1 RNA helicase family protein (.1) AT4G18465 239 / 2e-67 RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009601 [exp] 1234 / 0 AT5G13010 840 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Lus10037145 [exp] 342 / 8e-102 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10036783 [exp] 342 / 4e-101 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10031647 [exp] 307 / 5e-89 AT1G32490 1545 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10005261 [exp] 285 / 1e-83 AT3G62310 1300 / 0.0 RNA helicase family protein (.1) Lus10009600 [exp] 269 / 2e-80 AT5G13010 907 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Lus10033690 [exp] 284 / 3e-80 AT1G32490 1399 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10036991 [exp] 271 / 4e-79 AT1G27900 1089 / 0.0 RNA helicase family protein (.1) Lus10015812 [exp] 271 / 6e-79 AT1G27900 1097 / 0.0 RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G172500 [exp] 1110 / 0 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.012G034200 [exp] 350 / 6e-104 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G024400 [exp] 345 / 1e-102 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G008700 [exp] 314 / 8e-92 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.014G117900 [exp] 283 / 2e-83 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.002G192500 [exp] 283 / 3e-83 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.010G057200 [exp] 281 / 1e-82 AT1G27900 1077 / 0.0 RNA helicase family protein (.1) Potri.004G052700 [exp] 243 / 5e-69 AT4G18465 1092 / 0.0 RNA helicase family protein (.1) Potri.008G096800 [exp] 234 / 1e-65 AT1G26370 1019 / 0.0 RNA helicase family protein (.1) Potri.010G117800 [exp] 158 / 2e-39 AT2G01130 1639 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10000873 pacid=23158808 polypeptide=Lus10000873 locus=Lus10000873.g ID=Lus10000873.BGIv1.0 annot-version=v1.0 ATGACCACACTAAAACCTGAGCAGAGCGGAGAAGGAGGATTGTTCCTTCCCGGGAAGGAGAGGTTGAAGTTTACCGCTCCTGAAAGGAAATCCCTTTTAG GATTAGATGCCCTTGCAAATTCAAAACGAGGCGGGTCTGATGTGAGTGGGGGTTTTAAGGTCCCTACTCAGAGGATCGCTTCTACAATGGCATCAGTCAA TGAGAATGAAGAGAATGGGACTTCTGGACTGGACGAGGAAGGAGGGACCGATGATGTTGTAAGGAAGAATACGAGTCAGCGAAGATATCGTGAAACATCT GGCAGTGCTAGTCAGACAACTCATACAGAAAGTACCACGACTAGAGAGCGATCTGTTGATGACACATCTCGGAATCAGCATTCAAGAGGACGTTCATCTT CATATGCACCTAGTACCTCCACTCCGATATCTCATCAGGATTCATCCATGAGCCCGTCCAGAAGTCCATGGCGTTGGGGAGCTGATGACTACATCAGTGA TCGAAGAGGCAAGAAAAATGATGTTAGGAGTGCTAGTCTAAGGGATAGACACAGAAGTGGAAGTGATCGTGAAGACCGAAGTTATGGAAGAGAATCCAGA CGTCGGTATGAAGATGACTATGACGGAAATTATGGAAGAAAACGCTCTAGAACATCAGGCAGGTCAGACTGGGATGATGGAACTGCAAGATGGGAATGGG AAGATACTCCTCGCCGTGATACACCCTCTCATTCAAGCCGACACCATCGGCCTTCACCATCCCCAATGTTTGTCGGGGCCTCGCCTGATGCACGCTTAGT TTCCCCATGGTTGGGTGGAAATACTCCATTTTCTGCTGGTTCTGCTGCTTCTCCCTGGGATCGGGTTACTCCTTCTCCTATCCCAATACGGGCTTCTGGG TCGTCATATAAGTCTTCTAGTTCAAGACGTAATGCAAGGTCCGATCATTTAACATTCCCTTCTTCGTGTCCACAACAATTAGAGGAAGGAGAAAAATCAT TCCCATCTGAAGAACCTAATCTTGAGGTTACAGAGGACATGCGTTTGGAAATGGAATACAATTCAGACCGAGCCTGGTATGATAGAGAAGAAGGTAACAC AATGTTTGATACGAATAGCTCATCATTTTTCTTTGGAGATGAAGCTTCAACCCAGAAAAAAGAGGCAGAGCTAGCTAAAAAGCTGACTCGAAAAGATGGC TCCAAGATGTCACTAGCTCAAAGTAAGAAGTTATCTCAGCTTACTGCTGATAATGCCCAATGGGAAGACCGACAACTCTTGAGATCGGGTGCTGTTAGAG GAACTGAGGTGCAGACTGAATTTGATGACGAGGATGAACGCAAGGTTATTCTCCTTGTGCATGATACCAAACCTCCTTTCCTGGATGGTAGAGTGGTTTT CACTAAACAAGCAGAGCCAGTAATGCCCTTAAAAGATCCCACATCAGATATGGCCATCATTTCGCGGAAAGGTTCTGCCTTAGTCAGGGAGATCCGCGAG AAGCAGAGTCAGAACAAGTCCCGCCAAAGATTTTGGGAACTTGCCGGCTCAAAACTTGGTGATATTCTTGGCGTTGAGAAAACAGTGGAGCAAGTTGATG CTGATACTGCTGAAGTGGGTGAAGAAGGTGAAGTTAATTTCAAGCAAGAGGCAAAATTTGCACAGCACATGAAGAAGGGGGAAGCTGTGAGCGATTTTGC CATGTCAAAAAGCATGTCAGAGCAGCGGAAGTATCTTCCCATTTACTCTGTTAGGGATGAACTGTTGCAGGTGGTACGTGTTGCCAAAAGAGTTAGTGAA GAAATGGAGACTGAACTAGGGGATAAAGTTGGTTATGCAATCCGGTTTGAGGATGTGACTGGAAAGAACACTATAATTAAGTATATGACTGATGGAGTAC TCCTACGTGAAACACTGAAAGATTCTGAATTGGATAAGTATCGGGTCGTTGTCATGGATGAAGCTCACGAGAGATCTTTGAATACAGACGTACTCTTTGG GATTTTGAAAAAAGTGGTTGCACGACGTCGAGATTTCAAGCTCATTGTGACATCTGCAACTCTAAACGCTCAGAAGTTCTCACATTTTTTCGGAAGTGTA CCAATATTCGAGATCCCAGGGAGAACTTTCCCCGTGATGACCTATTTCAGCAAGACGCCTTGTGAAGATTATGTTGCATCAGCGGTTAAGCAAGCCATGG ATATCCACATCAGCAGTGGTCCGGGCGATATCCTCATATTTATGACCGGGCAAGACGAGATCGAAGCAGCTTGTTACTCTCTTGCAGAGAGGATGGAACA GATGACCGCCTCCACCACTAAAGAGGTTCAGAAGCTTTTGATACTGCCTATATACTCTCAGCTTCCTGCTGATTTGCAGGCCAAGATATTCCAGAAACCC GAGGATGGAGCTCGGAAATGCATCGTCGCCACCAACATTGCCGAGACTTCTTTGACCGTGGATGGAATCTTCTACGTCATCGACACTGGATATGGTAAAA TGAAGGTTTATAATCCAAGGATGGGTATGGACGCCCTCCAAGTCTTTCCCGTGAGCCAAGCTGCCGCGAATCAGCGGCCTTGCCGAGGTGGAATCAGCGG TCTGGCCGAGCTGGTAGGACTGGACCGGGTACATGCTATAGGCTTTACACCGAGAACGCGTACCAGAACGAGATGTTGCCGAGCCCGGTACCCGAGATTC AGAGGACAAATCTCGGTAACGTGGTCTTATTGTTGA
AA sequence Show only first row Show all	>Lus10000873 pacid=23158808 polypeptide=Lus10000873 locus=Lus10000873.g ID=Lus10000873.BGIv1.0 annot-version=v1.0 MTTLKPEQSGEGGLFLPGKERLKFTAPERKSLLGLDALANSKRGGSDVSGGFKVPTQRIASTMASVNENEENGTSGLDEEGGTDDVVRKNTSQRRYRETS GSASQTTHTESTTTRERSVDDTSRNQHSRGRSSSYAPSTSTPISHQDSSMSPSRSPWRWGADDYISDRRGKKNDVRSASLRDRHRSGSDREDRSYGRESR RRYEDDYDGNYGRKRSRTSGRSDWDDGTARWEWEDTPRRDTPSHSSRHHRPSPSPMFVGASPDARLVSPWLGGNTPFSAGSAASPWDRVTPSPIPIRASG SSYKSSSSRRNARSDHLTFPSSCPQQLEEGEKSFPSEEPNLEVTEDMRLEMEYNSDRAWYDREEGNTMFDTNSSSFFFGDEASTQKKEAELAKKLTRKDG SKMSLAQSKKLSQLTADNAQWEDRQLLRSGAVRGTEVQTEFDDEDERKVILLVHDTKPPFLDGRVVFTKQAEPVMPLKDPTSDMAIISRKGSALVREIRE KQSQNKSRQRFWELAGSKLGDILGVEKTVEQVDADTAEVGEEGEVNFKQEAKFAQHMKKGEAVSDFAMSKSMSEQRKYLPIYSVRDELLQVVRVAKRVSE EMETELGDKVGYAIRFEDVTGKNTIIKYMTDGVLLRETLKDSELDKYRVVVMDEAHERSLNTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSHFFGSV PIFEIPGRTFPVMTYFSKTPCEDYVASAVKQAMDIHISSGPGDILIFMTGQDEIEAACYSLAERMEQMTASTTKEVQKLLILPIYSQLPADLQAKIFQKP EDGARKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPRMGMDALQVFPVSQAAANQRPCRGGISGLAELVGLDRVHAIGFTPRTRTRTRCCRARYPRF RGQISVTWSYC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Lus10000873 [exp]	0	1
AT3G11960			Cleavage and polyadenylation s...		Lus10017295 [exp]	3.2	0.9208
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10033321 [exp]	4.2	0.9191
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10033319 [exp]	4.6	0.9138
AT3G01320		SNL1	SIN3-like 1 (.1.2)		Lus10014504 [exp]	5.3	0.9119
AT5G42390		SPP	stromal processing peptidase, ...		Lus10021970 [exp]	7.5	0.8936
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10017398 [exp]	9.2	0.9082
AT3G22380		TIC	time for coffee (.1.2)		Lus10010535 [exp]	10.6	0.8757
AT2G25730			unknown protein		Lus10007687 [exp]	12.4	0.9002
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Lus10035243 [exp]	12.8	0.8753
AT4G30100			P-loop containing nucleoside t...		Lus10033462 [exp]	13.4	0.9032

Compare expression of checked genes

Lus10000873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.