Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13010 536 / 0 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT3G26560 237 / 1e-70 ATP-dependent RNA helicase, putative (.1) AT2G35340 220 / 1e-64 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT1G32490 217 / 1e-63 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT3G62310 182 / 6e-52 RNA helicase family protein (.1) AT2G47250 178 / 2e-50 RNA helicase family protein (.1) AT5G14900 166 / 4e-49 helicase associated (HA2) domain-containing protein (.1) AT4G18465 166 / 3e-46 RNA helicase family protein (.1) AT1G26370 154 / 4e-42 RID1 RNA helicase family protein (.1) AT1G27900 119 / 6e-30 RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009600 [exp] 619 / 0 AT5G13010 907 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Lus10036783 [exp] 242 / 3e-72 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10027147 [exp] 229 / 1e-69 AT3G26560 555 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10031647 [exp] 210 / 5e-61 AT1G32490 1545 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10033690 [exp] 169 / 6e-47 AT1G32490 1399 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10005261 [exp] 160 / 3e-44 AT3G62310 1300 / 0.0 RNA helicase family protein (.1) Lus10037145 [exp] 161 / 4e-44 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10015812 [exp] 135 / 4e-35 AT1G27900 1097 / 0.0 RNA helicase family protein (.1) Lus10036991 [exp] 126 / 4e-32 AT1G27900 1089 / 0.0 RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G172500 [exp] 572 / 0 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.015G024400 [exp] 241 / 3e-72 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.012G034200 [exp] 239 / 2e-71 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G008700 [exp] 211 / 1e-61 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.002G192500 [exp] 185 / 4e-53 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.014G117900 [exp] 181 / 9e-52 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.004G052700 [exp] 169 / 3e-47 AT4G18465 1092 / 0.0 RNA helicase family protein (.1) Potri.008G096800 [exp] 158 / 3e-43 AT1G26370 1019 / 0.0 RNA helicase family protein (.1) Potri.010G057200 [exp] 125 / 7e-32 AT1G27900 1077 / 0.0 RNA helicase family protein (.1) Potri.016G068900 [exp] 99 / 1e-22 AT2G35920 1474 / 0.0 RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF07717 [flax] [poplar] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold CL0021 [flax] [poplar] PF04408 [flax] [poplar] HA2 Helicase associated domain (HA2)
Representative CDS sequence Show only first row Show all	>Lus10000874 pacid=23158796 polypeptide=Lus10000874 locus=Lus10000874.g ID=Lus10000874.BGIv1.0 annot-version=v1.0 ATGGACCCACCTCCACAGGATAATATCCTCAACTCTATGTATCAGCTCTGGGTCCTGGGTGCATTGAATAACGTTGGAGGTTTGACCGAGCTTGGGTGGA AAATGGTGGAGTTCCCTTTAGATCCTCCGCTAGCTAAGATGCTTTTGATGGGAGATCGATTGGGATGTGTGAATGAGGTTTTGACGATTGTATCGATGCT CTCTGTCCCCTCCGTGTTTTTCCGCCCCAAGGATAGGGCAGAGGAGAGTGATGCTGCAAGAGAGAAGTTTTTCGTCCCGGAATCTGACCATTTGACTCTG CTCAATGTGTACATGCAATGGAAAGAGCACCAATATCGTGGGGATTGGTGTAACGACCATTATTTGCACGTCAAAGGGTTGCGTAAAGCTCGAGAAGTGA GGTCCCAGCTGCTCGATATCCTCAAGGCCTTGAAAATCCCGTTGACTTCTTGCGGACATGATTGGGACGTGATCCGGAAAGCGATCTGCTCGGCCTATTT CCACAATTCGGCGAGGTTGAAAGGTGTTGGGGAGTATGTTAATTGCAGGTCAGGGATGCCGTGCCATTTGCACCCTACGAGCGCTCTGTATGGGCTGGGG TACACTCCAGATTACGTGGTTTACCACGAGCTGGTTTTGACGTCGAAAGAGTACATGCAGTGTGCGACTTCTGTGGAGGCACAGTGGTTGGCTGAGCTGG GACCAATGTTCTTTTCGGTTAAGGACTCGGATACGTCGTTGTTGGAGCATAAGAAGAAGCAGAAGGAAGAGAAGACGGCAATGGAGGAGGAGATGGAGAA TCTGAGGAAGGAGCAAGCGGAAGTGGAGAGGTTGAACAAGGAGAAGGAGAAGGTGAAGAGGGCGAAGGAGCAGCAGGTGATATCAATGCCGGGACTGCGC CAGGGCTCGTCGACTTACTTGCGGCCTAAGAAGTTTGGTCTGTAG
AA sequence Show only first row Show all	>Lus10000874 pacid=23158796 polypeptide=Lus10000874 locus=Lus10000874.g ID=Lus10000874.BGIv1.0 annot-version=v1.0 MDPPPQDNILNSMYQLWVLGALNNVGGLTELGWKMVEFPLDPPLAKMLLMGDRLGCVNEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTL LNVYMQWKEHQYRGDWCNDHYLHVKGLRKAREVRSQLLDILKALKIPLTSCGHDWDVIRKAICSAYFHNSARLKGVGEYVNCRSGMPCHLHPTSALYGLG YTPDYVVYHELVLTSKEYMQCATSVEAQWLAELGPMFFSVKDSDTSLLEHKKKQKEEKTAMEEEMENLRKEQAEVERLNKEKEKVKRAKEQQVISMPGLR QGSSTYLRPKKFGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Lus10000874 [exp]	0	1
AT2G17650			AMP-dependent synthetase and l...		Lus10028375 [exp]	1.0	0.9251
AT1G75560			zinc knuckle (CCHC-type) famil...		Lus10031093 [exp]	3.7	0.9146
AT1G79915			Putative methyltransferase fam...		Lus10035886 [exp]	4.0	0.9039
AT1G70570			anthranilate phosphoribosyltra...		Lus10036848 [exp]	8.7	0.8658
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10041897 [exp]	14.7	0.8890
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10041148 [exp]	16.6	0.9032
AT2G43320			S-adenosyl-L-methionine-depend...		Lus10015953 [exp]	16.8	0.9058
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10000451 [exp]	18.0	0.8937
AT5G05550	Trihelix		sequence-specific DNA binding ...		Lus10028985 [exp]	18.3	0.9008
AT5G37480			unknown protein		Lus10013637 [exp]	18.8	0.8973

Compare expression of checked genes

Lus10000874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.