Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12760 383 / 3e-136 unknown protein AT1G15860 111 / 9e-30 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) AT3G28970 95 / 6e-23 AAR3 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009599 [exp] 487 / 1e-177 AT3G12760 380 / 3e-135 unknown protein Lus10039198 [exp] 112 / 4e-30 AT1G15860 369 / 2e-131 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10013742 [exp] 114 / 5e-30 AT1G15860 367 / 5e-129 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10019598 [exp] 104 / 4e-27 AT1G15860 285 / 4e-98 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10040019 [exp] 100 / 2e-25 AT1G15860 278 / 2e-95 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10030685 [exp] 89 / 2e-20 AT3G28970 255 / 4e-84 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Lus10005235 [exp] 87 / 5e-20 AT3G28970 258 / 1e-84 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Lus10026216 [exp] 77 / 2e-17 AT1G15860 252 / 3e-86 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G083800 [exp] 441 / 4e-159 AT3G12760 415 / 1e-148 unknown protein Potri.018G112200 [exp] 114 / 9e-31 AT1G15860 267 / 4e-91 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.003G180300 [exp] 112 / 4e-30 AT1G15860 348 / 6e-123 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.001G047900 [exp] 103 / 1e-26 AT1G15860 328 / 3e-115 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.004G122100 [exp] 97 / 1e-23 AT3G28970 296 / 3e-100 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Potri.017G084300 [exp] 90 / 1e-21 AT3G28970 269 / 1e-90 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF03556 [flax] [poplar] Cullin_binding Cullin binding
Representative CDS sequence Show only first row Show all	>Lus10000875 pacid=23158800 polypeptide=Lus10000875 locus=Lus10000875.g ID=Lus10000875.BGIv1.0 annot-version=v1.0 ATGGCCATCACTGGGGCAAATGAGAAAGCTGCAGTTCAGGCTTTGAAGGCAAGTGATTGGCATCTTGAAGGGGCATTTGATGTGTTCTACAGCCAACCCC AGATTAAAACATCTACTGATTCCAGACATCTGGAAGAGCTTTACAATAGATATAAAGATCCATATATGGACATGATACTGGCTGATGGGATTGCTCGACT TTGCAATGACATTCAGGTCGATCCTCAAGACATCGTTATGTTAGTTGTTTCATGGCATATGAAGGCTGCCACCATGTGTGAATTCTCGAAGCAAGAATTT ATTGGTGGACTACAATCACTAGGAATAGATTCACTGGAAAAGTTCCGAGAAAGGGTACCATCTATGCGTTCTGAGATGAAAGATGAACAAAAGTTCCGCG AGATATACAATTTTGCTTTTGGGTGGGCAAAGGAGAAAGGCCAAAAATCTCTAGCACTGGATACGGCTATTGGTATGTGGCAATTACTATTTGCTGAAAA GCATTGGCCACTGGTTGATCACTGGTGCCAGTTCTTACAGGCTAAGCATAATAAAGCTATCTCAAGGGATACATGGTCTCAACTATTGGAATTTACCAGG ACGGTGGACCCTGAGCTGTTGAACTACGACGCTGAAGGGGCTTGGCCGTATTTGATAGACGAATTTGTCGAGTACCTGAACGAGAATGGAGTGGGGGAGG CTGTTGAGTGA
AA sequence Show only first row Show all	>Lus10000875 pacid=23158800 polypeptide=Lus10000875 locus=Lus10000875.g ID=Lus10000875.BGIv1.0 annot-version=v1.0 MAITGANEKAAVQALKASDWHLEGAFDVFYSQPQIKTSTDSRHLEELYNRYKDPYMDMILADGIARLCNDIQVDPQDIVMLVVSWHMKAATMCEFSKQEF IGGLQSLGIDSLEKFRERVPSMRSEMKDEQKFREIYNFAFGWAKEKGQKSLALDTAIGMWQLLFAEKHWPLVDHWCQFLQAKHNKAISRDTWSQLLEFTR TVDPELLNYDAEGAWPYLIDEFVEYLNENGVGEAVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12760			unknown protein		Lus10000875 [exp]	0	1
AT2G17080			Arabidopsis protein of unknown...		Lus10023959 [exp]	3.0	0.8899
					Lus10026715 [exp]	6.1	0.8943
AT5G66440			unknown protein		Lus10041775 [exp]	8.0	0.8926
AT2G27020		PAG1	20S proteasome alpha subunit G...		Lus10037416 [exp]	8.9	0.8874
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10015867 [exp]	9.9	0.8845
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10015075 [exp]	10.4	0.8780
AT4G09720		AtRABG3a	RAB GTPase homolog G3A (.1.2.3...		Lus10006059 [exp]	10.6	0.8813
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10015862 [exp]	15.5	0.8872
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10000105 [exp]	17.5	0.8607
AT3G25120			Mitochondrial import inner mem...		Lus10013127 [exp]	19.2	0.8566

Compare expression of checked genes

Lus10000875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.