Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10950 130 / 4e-36 SGNH hydrolase-type esterase superfamily protein (.1) AT2G04020 84 / 1e-19 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G03980 85 / 2e-19 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 84 / 1e-18 GLIP7 GDSL-motif lipase 7 (.1) AT2G04570 83 / 1e-18 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G16370 81 / 7e-18 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G22810 79 / 3e-17 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G08460 79 / 3e-17 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45960 77 / 2e-16 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G42990 77 / 2e-16 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001532 [exp] 242 / 1e-78 AT4G10950 544 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10032399 [exp] 228 / 3e-73 AT4G10950 495 / 1e-175 SGNH hydrolase-type esterase superfamily protein (.1) Lus10028425 [exp] 84 / 1e-18 AT1G75900 333 / 8e-109 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041878 [exp] 83 / 3e-18 AT1G75900 279 / 7e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006856 [exp] 81 / 6e-18 AT3G16370 507 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10008635 [exp] 81 / 1e-17 AT5G03810 460 / 3e-163 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10029958 [exp] 80 / 2e-17 AT2G42990 448 / 1e-158 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10009455 [exp] 78 / 4e-17 AT1G71691 232 / 2e-75 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10004774 [exp] 77 / 4e-17 AT5G18430 311 / 3e-106 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G141300 [exp] 153 / 1e-44 AT4G10950 535 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.002G219700 [exp] 83 / 1e-18 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191600 [exp] 81 / 9e-18 AT3G16370 410 / 1e-142 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024600 [exp] 81 / 1e-17 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.009G151000 [exp] 80 / 2e-17 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191400 [exp] 79 / 4e-17 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G051900 [exp] 78 / 7e-17 AT5G45950 430 / 3e-151 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 78 / 9e-17 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 77 / 1e-16 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160100 [exp] 77 / 2e-16 AT2G04570 497 / 5e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000876 pacid=23145678 polypeptide=Lus10000876 locus=Lus10000876.g ID=Lus10000876.BGIv1.0 annot-version=v1.0 ATGATTCTTCCGCTTCTGTTGATCCTCTTCGCCGCCGTTTTCAACCAATCGATGACCCTAACTGTTCCTCAGCAGCTGTACGACTTCTCTCAGATGATCT TCGCCTACGAAAGTAACGGCCCTTTCGTCTCCCCTTCTTCTTCTCCGTCGTCCTTTTCCTCGCTTACTCCCGTCCCTTCCGTATCTCCTTCGCCGTACTC TAGTTCTCCGCCGCCTCTTGTTCCGGCGTTTTTCGTGATTGGCGATTCCGCCATCGATTGCGGTACCAACAACTACCTAGGCACCTTCGAACGCGCCGAT CGCCCTCCGTACGGAAGAGATTTCGACACGCGCAGGCCCACTGGAAGGTTCTGCAACGGACGGATCCCTGTTGATTATCTTGCATTACGCCTAGGGCTAC CATTTGTTCCAAGCTATCTGGGGCAGAATGGAACTTTGGGAGACATGATCCATGGAGTGAACTATGCTTCAGCTGGAGCTGGCATTATTTTCTCGAGTGG CTCAGAACTGGTAAATGCTCTTTCTGCACAATTGCATAGTCTTGTTCTGATTACCCTTAGTAAAATGGTTAGGCAAATGATGAACAATGGTATAAATGTT TTGGTTTCAGGGTCAGAGAATCTCCTTGACTCACCAAGTTCAGCAGTCCACTGA
AA sequence Show only first row Show all	>Lus10000876 pacid=23145678 polypeptide=Lus10000876 locus=Lus10000876.g ID=Lus10000876.BGIv1.0 annot-version=v1.0 MILPLLLILFAAVFNQSMTLTVPQQLYDFSQMIFAYESNGPFVSPSSSPSSFSSLTPVPSVSPSPYSSSPPPLVPAFFVIGDSAIDCGTNNYLGTFERAD RPPYGRDFDTRRPTGRFCNGRIPVDYLALRLGLPFVPSYLGQNGTLGDMIHGVNYASAGAGIIFSSGSELVNALSAQLHSLVLITLSKMVRQMMNNGINV LVSGSENLLDSPSSAVH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10950			SGNH hydrolase-type esterase s...		Lus10000876 [exp]	0	1
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10009455 [exp]	4.8	0.9336
AT4G31380		FLP1	FPF1-like protein 1 (.1)		Lus10040802 [exp]	5.3	0.9217
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10031672 [exp]	11.9	0.9231
AT2G40010			Ribosomal protein L10 family p...		Lus10040214 [exp]	13.9	0.9225
AT1G24100		UGT74B1	UDP-glucosyl transferase 74B1 ...		Lus10010712 [exp]	17.0	0.9054
AT2G40010			Ribosomal protein L10 family p...		Lus10028276 [exp]	18.6	0.9216
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10043291 [exp]	19.9	0.9207
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10023294 [exp]	20.4	0.9147
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10006548 [exp]	23.6	0.9086
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10023458 [exp]	23.7	0.9191

Compare expression of checked genes

Lus10000876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.