Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41970 439 / 1e-153 Metal-dependent protein hydrolase (.1) AT3G49320 407 / 1e-141 Metal-dependent protein hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033229 [exp] 522 / 0 AT5G41970 573 / 0.0 Metal-dependent protein hydrolase (.1) Lus10017324 [exp] 475 / 2e-168 AT5G41970 574 / 0.0 Metal-dependent protein hydrolase (.1) Lus10008867 [exp] 394 / 4e-136 AT5G41970 507 / 0.0 Metal-dependent protein hydrolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G145900 [exp] 451 / 3e-158 AT5G41970 557 / 0.0 Metal-dependent protein hydrolase (.1) Potri.015G007900 [exp] 419 / 4e-146 AT3G49320 525 / 0.0 Metal-dependent protein hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03690 [flax] [poplar] UPF0160 Uncharacterised protein family (UPF0160)
Representative CDS sequence Show only first row Show all	>Lus10000877 pacid=23145676 polypeptide=Lus10000877 locus=Lus10000877.g ID=Lus10000877.BGIv1.0 annot-version=v1.0 ATGGGGCGGCCATGCTCTTATTTATTCATTCTGTTTTTCAATTATTGGGTTGAAGGAGGGAGTGAGAGTGAAGTCGTAAAGTTTTGGAGGGCTATGCTGG CATTAACTACCACAGGGTTTAAGGCGCAGAAGCTCTTCGTCTCCTCCTCCATTTTCAACTTCCCCAAAACCCTTCTTCTTCCTTTGCTACCTCGTCGTCC TCTCCCATTCCTCCCCATGTCTACTACCCCCGTTGTATCTTCTCCTCCTTACTCCACTGTTTCCCTTAACAAGCGCGTCGGCACTCACAATGGTACCTTT CACTGCGACGAGGCACTCGGCTGCTTCATGATTCGTCTCACCAATAAGTTCGCCGACGCTGACATCGTCCGCACCCGCGACTCGCAGGTGTTGGAGACTC TTGATGCAGTGCTCGACGTTGGAGGTGTGTATGATCCGAGTCGCGATCGGTACGATCACCATCAGAGGGGATTTGAGGAGGTGTTTGGACACGGGTTCTC TACTAAACTTAGTAGCGCTGGACTTGTCTATAAGCATTTCGGCAAGGAGATTATAGCCAAGGAGCTACAAGTTGATGAGGAGCACCCTGATGTCCTACGT TTGTTCCTTGCTATTTACAAAAGCTTTATGGAGTACACAAATGTTCATCAAGGCCTGTTCTCTGACAGTTGCCTTGATCACTATGAATTGAACTCTTTCC CTTCGCTTCCCAGGCGATTGATGCAGGTGACAATGGAATCAGCCGGTATGATACCGACAACAATGGCTTTGGCCTGTAGCGAATTCTTAGATAGTCTTCG TTTCCATGCAAGGTCGTGGTTGCCTGCCCGATCAATAGTTCTGGGATGTCTTGCAGCCAGGTTCGACGTTGATCCCAGTGGAGAGATCATGGTTTTAACC CAATTCTGCCCTTGGAAACTTCACTTGTTTGAGCTTGAGGAGGAAATGAAGATTGAGCCTTCAATCAAATACGTTCTCTATCAGGACGATCGTAGCAAGC ATTGGAGAGTGCAAGCAATGGCAGTGTCTCCAGACAGCTTCGAGAGCCGAAAAGCTCTCCCGGTTAAATGGAGAGGACTGAGAGATGCGGATCTGTCGAA TGAAGCAGAAATCCCGGCTTGTGTTTTCGTCCACATGAGCGGGTTTATTGGTGGGAACCAAAGTTATGAAGGCGCCCTTGCCATGGCTAAAGCTGCCCTC AAGCTCTGA
AA sequence Show only first row Show all	>Lus10000877 pacid=23145676 polypeptide=Lus10000877 locus=Lus10000877.g ID=Lus10000877.BGIv1.0 annot-version=v1.0 MGRPCSYLFILFFNYWVEGGSESEVVKFWRAMLALTTTGFKAQKLFVSSSIFNFPKTLLLPLLPRRPLPFLPMSTTPVVSSPPYSTVSLNKRVGTHNGTF HCDEALGCFMIRLTNKFADADIVRTRDSQVLETLDAVLDVGGVYDPSRDRYDHHQRGFEEVFGHGFSTKLSSAGLVYKHFGKEIIAKELQVDEEHPDVLR LFLAIYKSFMEYTNVHQGLFSDSCLDHYELNSFPSLPRRLMQVTMESAGMIPTTMALACSEFLDSLRFHARSWLPARSIVLGCLAARFDVDPSGEIMVLT QFCPWKLHLFELEEEMKIEPSIKYVLYQDDRSKHWRVQAMAVSPDSFESRKALPVKWRGLRDADLSNEAEIPACVFVHMSGFIGGNQSYEGALAMAKAAL KL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41970			Metal-dependent protein hydrol...		Lus10000877 [exp]	0	1
AT3G18600			P-loop containing nucleoside t...		Lus10027240 [exp]	1.4	0.9349
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10009390 [exp]	2.4	0.9251
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10020542 [exp]	3.5	0.9195
AT5G41970			Metal-dependent protein hydrol...		Lus10033229 [exp]	4.2	0.9077
AT3G01790			Ribosomal protein L13 family p...		Lus10014597 [exp]	4.4	0.8844
AT2G37020			Translin family protein (.1.2)		Lus10029829 [exp]	4.7	0.8936
AT4G18590			Nucleic acid-binding, OB-fold-...		Lus10014210 [exp]	5.0	0.8796
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10015029 [exp]	5.3	0.8926
AT3G05130			unknown protein		Lus10002255 [exp]	5.7	0.8749
AT4G02930			GTP binding Elongation factor ...		Lus10008161 [exp]	7.7	0.9137

Compare expression of checked genes

Lus10000877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.