Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24100 868 / 0 Protein kinase superfamily protein (.1) AT4G10730 862 / 0 Protein kinase superfamily protein (.1) AT1G79640 521 / 1e-176 Protein kinase superfamily protein (.1.2) AT5G14720 501 / 8e-169 Protein kinase superfamily protein (.1) AT1G70430 431 / 1e-142 Protein kinase superfamily protein (.1) AT4G14480 308 / 1e-96 Protein kinase superfamily protein (.1) AT1G23700 291 / 2e-90 Protein kinase superfamily protein (.1) AT1G53165 224 / 2e-63 ATMAP4KALPHA1 ,ATMAP4K ALPHA1 Protein kinase superfamily protein (.1.2.3) AT3G15220 223 / 8e-63 Protein kinase superfamily protein (.1) AT1G69220 216 / 1e-59 SIK1 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033230 [exp] 1338 / 0 AT4G24100 895 / 0.0 Protein kinase superfamily protein (.1) Lus10001677 [exp] 1077 / 0 AT4G10730 892 / 0.0 Protein kinase superfamily protein (.1) Lus10017326 [exp] 1059 / 0 AT4G10730 883 / 0.0 Protein kinase superfamily protein (.1) Lus10014542 [exp] 487 / 3e-162 AT5G14720 895 / 0.0 Protein kinase superfamily protein (.1) Lus10032144 [exp] 473 / 6e-158 AT5G14720 838 / 0.0 Protein kinase superfamily protein (.1) Lus10026108 [exp] 471 / 4e-157 AT1G79640 789 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000416 [exp] 469 / 1e-155 AT1G79640 760 / 0.0 Protein kinase superfamily protein (.1.2) Lus10021882 [exp] 308 / 2e-96 AT4G14480 501 / 6e-175 Protein kinase superfamily protein (.1) Lus10041162 [exp] 212 / 4e-63 AT4G14480 310 / 1e-103 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G084700 [exp] 1040 / 0 AT4G10730 905 / 0.0 Protein kinase superfamily protein (.1) Potri.003G146000 [exp] 1021 / 0 AT4G10730 902 / 0.0 Protein kinase superfamily protein (.1) Potri.001G037900 [exp] 521 / 9e-177 AT1G79640 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G186700 [exp] 511 / 3e-172 AT1G79640 862 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G349300 [exp] 493 / 3e-165 AT5G14720 963 / 0.0 Protein kinase superfamily protein (.1) Potri.008G163800 [exp] 333 / 2e-105 AT4G14480 504 / 1e-175 Protein kinase superfamily protein (.1) Potri.004G194700 [exp] 268 / 6e-82 AT4G14480 356 / 1e-118 Protein kinase superfamily protein (.1) Potri.016G049500 [exp] 258 / 5e-77 AT4G14480 368 / 2e-122 Protein kinase superfamily protein (.1) Potri.001G397600 [exp] 221 / 3e-62 AT3G15220 828 / 0.0 Protein kinase superfamily protein (.1) Potri.011G116300 [exp] 216 / 2e-60 AT3G15220 817 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10000878 pacid=23145673 polypeptide=Lus10000878 locus=Lus10000878.g ID=Lus10000878.BGIv1.0 annot-version=v1.0 ATGGGAGGTAGTCAGCGCATGTATTCTGTCAATCATACTGACTATAAGCTTCTCGAAGAGGTCGGCCATGGCGCCAGCGCTACGGTTTACAGGGCGATCT ATATTCCATCCAACGAAGTCATTGCTGTCAAGTGCTTGGATCTCGATCGATGCAACAGCAATCTGGATGATATACGTAAAGAAGCTCAAACCATGAGTTT GGTAGACCATCCAAATGTTATTAAGGCTTTTTGTTCATTTGTCGTTGATCGGCATCTTTGGGTGATTATGCCGTTTATGGCAGAGGGTTCTTGTTTGCAA CTTATGAAGATAGCATTTCCTGATGGATTTGAAGAAGCTGCTATTGGTTCCATTCTAAAAGAAACTCTCAAGGCCCTAGATTACCTACATCGTCAAGGCC ACATCCATCGTGATGTCAAGGCAGGAAACATACTACTGGATACGAATGGAATTGTAAAACTAGCTGATTTTGGTGTGTCAGCTTGCATATTTGATACAGG AGACAGGCAACGTGCAAGAAATACTTTTGTGGGAACTCCGTGCTGGATGGCACCTGAAGTGTTGCAGCCAGGAAGTGGATATAATTCAAAGGCTGATATT TGGTCGTTTGGTATTACTGCATTGGAGTTGGCGCATGGTCATGCACCTTTCTCAAAGTATCCCCCAATGAAGGTACTTTTGATGACAATTCAGAATGCTC CTCCTGGGCTTGATTATGATCGCGATAAAAAGTTCTCCAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTTGTAAAAGATCAAACAAAAAGGCCGACTGC GGATAAGTTATTGAAACACTCATTCTTCAAGCATGCAAAACCACCGGAGCTATCTGTGAAGAAATTGTTTGCCGACTTGCCTCCACTTTGGAATCGTGTC AAAGCACTTCAGGTGAACCATTGTACTGATGTGATTTTTCCTTGGTGCCTTCTCACTAGAAAGGTGGCTAATGAACTTACTGAAACGTCTCAGCTTAAGG ATGCTGCACAGCTTGCTCTAAAAAGAATGCCGTCTGCTGAACAAGAAGCTCTGTCGCAGAGTGAGTACCAACGAGGAGTTAGCGCGTGGCACTTTGACAT CGAGGATCTGAAAGCCCAGGCGTCACTGGTAAGAGATGAGGATGACGATGGTGATGATGGTGATATGTGTCAGACTAGATATGAAGATGGAAGTTCGAAA CCTTCTGGGAGGGATAAGGCTTTAACCAATGGCCAGCCTCATCTGGTGAAACACTCTTCCACTAGTGAAATTTCACTACTAGAGTCTAGAACTGAAACAT CTCTGGAGAATGATATACTGGAAGCAAGCTATCCAGAGAAACTTGGCATTGACAGAAATGACTCAAGCGCTGAGTCTAAAGCATCAACCTCAGAAAAGGA AGCTGTGCAGACTAAGGTTAAAGCAGTCAAAAGTCGCCAAAATCTTAGTGGACCGCTCATTCCTGGTAATGCATTCCAGTCAGCATCAGAAAGAGCTCGT ACTTCGGAAAGGTTTGAGAATGAAATTCAACCAACAAATGAAAAAATCACAAGAAAAGTTCCAAGCTTTAGTGGCCCTTTGATGCTACCAAACCGAGCTT CAGCTAATAGTTTTTCGGCTCCTATCAAATCATCTGGAGGGTTTAGAGATTCTCTGGATGATAAGAGTAAAGCTAATCTGGTACAAATCAAAGGGCGATT CTCGGTGACATCAGAAAATTTGGACCTTGCAAAGGATGTTCCTTTGAGCACGGTTCAACGTCGAGCCTCACAGACATCACCACTGAGAAAGTCTGCTAGC GTGGGTGACTGGATAACCGAGTCCAAACCCATGCCGGTGGTCCAATCACAAAAAGAGGTTAGTAGCAGCAATTTACCTGCACCGCAGCTCATGACTCACC TTCAGAATCTTTTCCAGCAGACCTCGACTCAACAGGAGCTCATTCTGAATTTGTTGAATAGCTTACAACCAACGGAGTTGTCTGATGGTGTACCAAATGG CAAGTTGCCTCCGCTGCCCCGCTGCCTCGAGAATAATGGGAATGTCGACACTGCTGCTTCCGAGAGAGAGCGGTCATTATTGATAAAGATCTCTGAACTC AACTCCAGAATGACCATTTTGTCCGACGAACTGACTGCTGAAAAGCTGAAATATGAACAGTTACAGCGGCAGCTGAAATCAGACGGGAGGGAAGCTGTTC CCGAAACCTAA
AA sequence Show only first row Show all	>Lus10000878 pacid=23145673 polypeptide=Lus10000878 locus=Lus10000878.g ID=Lus10000878.BGIv1.0 annot-version=v1.0 MGGSQRMYSVNHTDYKLLEEVGHGASATVYRAIYIPSNEVIAVKCLDLDRCNSNLDDIRKEAQTMSLVDHPNVIKAFCSFVVDRHLWVIMPFMAEGSCLQ LMKIAFPDGFEEAAIGSILKETLKALDYLHRQGHIHRDVKAGNILLDTNGIVKLADFGVSACIFDTGDRQRARNTFVGTPCWMAPEVLQPGSGYNSKADI WSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQTKRPTADKLLKHSFFKHAKPPELSVKKLFADLPPLWNRV KALQVNHCTDVIFPWCLLTRKVANELTETSQLKDAAQLALKRMPSAEQEALSQSEYQRGVSAWHFDIEDLKAQASLVRDEDDDGDDGDMCQTRYEDGSSK PSGRDKALTNGQPHLVKHSSTSEISLLESRTETSLENDILEASYPEKLGIDRNDSSAESKASTSEKEAVQTKVKAVKSRQNLSGPLIPGNAFQSASERAR TSERFENEIQPTNEKITRKVPSFSGPLMLPNRASANSFSAPIKSSGGFRDSLDDKSKANLVQIKGRFSVTSENLDLAKDVPLSTVQRRASQTSPLRKSAS VGDWITESKPMPVVQSQKEVSSSNLPAPQLMTHLQNLFQQTSTQQELILNLLNSLQPTELSDGVPNGKLPPLPRCLENNGNVDTAASERERSLLIKISEL NSRMTILSDELTAEKLKYEQLQRQLKSDGREAVPET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24100			Protein kinase superfamily pro...		Lus10000878 [exp]	0	1
AT4G24100			Protein kinase superfamily pro...		Lus10033230 [exp]	1.0	0.9649
AT4G00800		SETH5	transducin family protein / WD...		Lus10030199 [exp]	4.0	0.9043
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10005173 [exp]	4.6	0.9054
AT1G58230			binding (.1)		Lus10042866 [exp]	4.7	0.9135
AT5G42940			RING/U-box superfamily protein...		Lus10010036 [exp]	5.3	0.8866
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10000941 [exp]	6.0	0.8706
AT5G15680			ARM repeat superfamily protein...		Lus10035141 [exp]	8.1	0.8791
AT5G05570			transducin family protein / WD...		Lus10037841 [exp]	8.5	0.8882
AT2G46560			transducin family protein / WD...		Lus10005974 [exp]	11.5	0.8683
AT1G05570		ATGSL6, ATGSL06...	GLUCAN SYNTHASE-LIKE 6, callos...		Lus10037469 [exp]	12.9	0.8184

Compare expression of checked genes

Lus10000878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.