Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24120 977 / 0 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1) AT5G53550 894 / 0 ATYSL3, YSL3 YELLOW STRIPE like 3 (.1.2) AT5G24380 884 / 0 ATYSL2, YSL2 YELLOW STRIPE like 2 (.1) AT1G65730 713 / 0 YSL7 YELLOW STRIPE like 7 (.1) AT3G27020 709 / 0 YSL6 YELLOW STRIPE like 6 (.1) AT5G41000 697 / 0 YSL4 YELLOW STRIPE like 4 (.1) AT3G17650 655 / 0 YSL5, PDE321 pigment defective 321, YELLOW STRIPE like 5 (.1) AT1G48370 652 / 0 YSL8 YELLOW STRIPE like 8 (.1) AT5G45450 219 / 4e-67 Oligopeptide transporter OPT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033231 [exp] 1261 / 0 AT4G24120 1011 / 0.0 YELLOW STRIPE like 1 (.1) Lus10022360 [exp] 914 / 0 AT5G53550 1044 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10008836 [exp] 868 / 0 AT5G53550 1000 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10023240 [exp] 867 / 0 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10008869 [exp] 863 / 0 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10022358 [exp] 838 / 0 AT5G53550 939 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10032950 [exp] 823 / 0 AT5G53550 912 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10013323 [exp] 719 / 0 AT1G65730 1127 / 0.0 YELLOW STRIPE like 7 (.1) Lus10043408 [exp] 698 / 0 AT1G65730 1114 / 0.0 YELLOW STRIPE like 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G084400 [exp] 996 / 0 AT4G24120 932 / 0.0 YELLOW STRIPE like 1 (.1) Potri.001G082400 [exp] 944 / 0 AT4G24120 813 / 0.0 YELLOW STRIPE like 1 (.1) Potri.011G055224 [exp] 916 / 0 AT5G53550 1008 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.012G024700 [exp] 769 / 0 AT5G53550 858 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.001G327300 [exp] 699 / 0 AT3G27020 1088 / 0.0 YELLOW STRIPE like 6 (.1) Potri.004G069200 [exp] 695 / 0 AT1G65730 964 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G150500 [exp] 686 / 0 AT1G65730 936 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151800 [exp] 686 / 0 AT1G65730 935 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151600 [exp] 676 / 0 AT3G17650 921 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.004G069300 [exp] 667 / 0 AT3G17650 897 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10000879 pacid=23145674 polypeptide=Lus10000879 locus=Lus10000879.g ID=Lus10000879.BGIv1.0 annot-version=v1.0 ATGAACATGGAGCAAGAGCAAGCAGCAGCTGCAAAAGACAAGAAGGAGATTAACAAGAAGCGAGATGATAACAAAGACGAAGACAGTGACGAAGATGGTG CTGATGATGAGCCATCATCATCTTCGCCAGAGGAATTCCTCAGAGCACAGCCATGGACGAAGCAGATCACAGTGAGAGGATTCATAGTGAGCATAATGAT TGGATCAATGTACAGTGTGATAGCCATGAAGCTCAACCTGACGACCGGATTGGTTCCGAATCTCAATGTCTCGGCTGCACTAGTGGCCTTTGTCCTGATC AGGGCATGGACTAAGTTGGTTGGGAAGTTGGGATATGTTACAAAGCCTTTTACAAGACAGGAGAATACTATGATCCAGACTTGTGCTGTGGCATGTTACA GTATTACCATCGGAGGTGGATTTGCTTCTTATCTCTTGGGGCTAAACACAAAGACTTATGAGCTTTCAGGTATTCATACAGAAGGGAACTCTCCTTCTGC TGTTAAGGATCCTGGGTTTGGTTGGATGACTGGTTACCTTTTTCTGGTGTGCTTTGTCGGCCTTTTTGTCTTAATTCCTCTCAGAAAGGTGATGATTGTA GACATGGAGTTGACTTATCCTAGTGGCTTAGCCACTGCAGTTCTCATCAATGGATTCCACAATCGAGGCGACAAGATGGCCAAAAAGCAGGTTCGCGGGT TCATGAACTACTTCTCGATGAGTTTCGTTTGGGCACTGTTCAAGTGGTTCTATGCAAAGACAGAGGAATGTGGGTTCAATCAGTTCCCAACCTTTGGGTT GAAAGCTTGGAAGCAAACGTTTTATTTCGACTTCAACACAACATACGTGGGAGCAGGGATGATAGTTTCACACCAAGTGAACCTTTCTCTTCTTTTTGGA GCTATTTTGTCATATGGGATCATGTGGCCTCTCATCGACGACCTTAAGGGAAAATGGTTTGAATCCAATCTGGAAGAAAGCAGCATGAAGAGCTTATATG GTTATAAGGTTTTTCTGTCAGTTGCACTCATCCTAGGAGATGGGCTCTACAATTTCATTAAGGTAATGAGTTTCACTATCATCAACATCCACGGCAGGAT GAGGAACAAGAAGCTCAAATCAGAAGGAACAGGGGAGTTTGAGATAAAGCAACTGGAGGACAAGAAACAAACAGAGCTATTTCTACGAGAGAAGATACCT ATGTGGATTGGATTGGTGGGCTACATTTCATTCTCAATCCTCTCAACAATCATGGTACCAATGATTTTCCCACAGCTGAAATGGTACTACGTCGTCGTAG CCTACATCCTAGCTCCATCTCTGGCCTTCTGCAACGCTTACGGAGCAGGCCTCACCGACATAAACATGGCCTACAACTACGGCAAAGTCGCTCTCTTCAT CCTAGCAGCTGTTTCTGGGAAACAAAACGGAGTTGTCGCGGCTCTAGCAGGTTGCGGACTCGTAAAATCGGTAGTCTCAGTGGCTTGCATACTGATGCAG GACTTCAAAACAGCTCATTTGACACGCACGTCACCTAGGGCCATGTTCGCTAGCCAGGTCATGGGGACTGCACTCGGCTGCATAATGGCTCCCCTCAGTT TCTTCCTGTTTTACAAGGCTTTCGACGTTGGGAACCCGAACGGGGAGTTTAAGTCGCCTTACGCTTTGATTTACAGGAACATGGCTATACTTGGGGTTGA GGGTTTCTCGGCTTTGCCTACGCATTGTTTGCAGCTGTGTTATGGGTTCTTTGCATTTGCTGTGGGGATTAACATGGTGAGGGATGCTGCTCCTGTGAAG ATTGGGAATTGGATGCCGATGCCTATGGTCATGGCCATCCCATTTCTCGTTGGGGCTTATTTCGCTATTGATATGTGCCTGGGGAGTTTGATAGTTTACG TTTGGAGCAAGATGAAGCCGAAGAAGGCCGAGTTTATGATTCCAGCAGTTGCTTCTGGGATGATCTGTGGGGAAGGGTTGTGGACTCTTCCATCGGCAAT TCTTGCTCTGGCGAAAGTAAATCCGCCGATGTGCATGACTTTTGCCGGCTCCTAG
AA sequence Show only first row Show all	>Lus10000879 pacid=23145674 polypeptide=Lus10000879 locus=Lus10000879.g ID=Lus10000879.BGIv1.0 annot-version=v1.0 MNMEQEQAAAAKDKKEINKKRDDNKDEDSDEDGADDEPSSSSPEEFLRAQPWTKQITVRGFIVSIMIGSMYSVIAMKLNLTTGLVPNLNVSAALVAFVLI RAWTKLVGKLGYVTKPFTRQENTMIQTCAVACYSITIGGGFASYLLGLNTKTYELSGIHTEGNSPSAVKDPGFGWMTGYLFLVCFVGLFVLIPLRKVMIV DMELTYPSGLATAVLINGFHNRGDKMAKKQVRGFMNYFSMSFVWALFKWFYAKTEECGFNQFPTFGLKAWKQTFYFDFNTTYVGAGMIVSHQVNLSLLFG AILSYGIMWPLIDDLKGKWFESNLEESSMKSLYGYKVFLSVALILGDGLYNFIKVMSFTIINIHGRMRNKKLKSEGTGEFEIKQLEDKKQTELFLREKIP MWIGLVGYISFSILSTIMVPMIFPQLKWYYVVVAYILAPSLAFCNAYGAGLTDINMAYNYGKVALFILAAVSGKQNGVVAALAGCGLVKSVVSVACILMQ DFKTAHLTRTSPRAMFASQVMGTALGCIMAPLSFFLFYKAFDVGNPNGEFKSPYALIYRNMAILGVEGFSALPTHCLQLCYGFFAFAVGINMVRDAAPVK IGNWMPMPMVMAIPFLVGAYFAIDMCLGSLIVYVWSKMKPKKAEFMIPAVASGMICGEGLWTLPSAILALAKVNPPMCMTFAGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Lus10000879 [exp]	0	1
AT1G23090		SULTR3;3, AST91	sulfate transporter 91 (.1)		Lus10034603 [exp]	4.5	0.8590
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10028175 [exp]	8.9	0.8598
AT5G23980		FRO2, ATFRO4, F...	ferric reduction oxidase 4 (.1...		Lus10014957 [exp]	9.2	0.8715
AT5G49660		XIP1	XYLEM INTERMIXED WITH PHLOEM 1...		Lus10028234 [exp]	9.7	0.8670
AT4G01570			Tetratricopeptide repeat (TPR)...		Lus10007863 [exp]	10.8	0.8335
AT5G49660		XIP1	XYLEM INTERMIXED WITH PHLOEM 1...		Lus10007233 [exp]	14.0	0.8633
					Lus10035928 [exp]	15.5	0.8001
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10009884 [exp]	19.3	0.8526
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10003875 [exp]	23.0	0.8246
AT5G20700			Protein of unknown function (D...		Lus10027595 [exp]	23.2	0.8338

Compare expression of checked genes

Lus10000879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.