Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64660 618 / 0 ATMGL methionine gamma-lyase (.1) AT3G01120 177 / 9e-50 AtCGS1, ATCYS1, CGS1, MTO1 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G33320 152 / 1e-41 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT3G57050 138 / 3e-36 CBL cystathionine beta-lyase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017333 [exp] 666 / 0 AT1G64660 676 / 0.0 methionine gamma-lyase (.1) Lus10000881 [exp] 649 / 0 AT1G64660 588 / 0.0 methionine gamma-lyase (.1) Lus10001672 [exp] 546 / 0 AT1G64660 546 / 0.0 methionine gamma-lyase (.1) Lus10033233 [exp] 416 / 7e-145 AT1G64660 377 / 8e-130 methionine gamma-lyase (.1) Lus10000074 [exp] 236 / 9e-77 AT1G64660 244 / 2e-80 methionine gamma-lyase (.1) Lus10001671 [exp] 233 / 1e-75 AT1G64660 242 / 2e-79 methionine gamma-lyase (.1) Lus10030694 [exp] 163 / 2e-44 AT3G01120 702 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10005226 [exp] 142 / 7e-37 AT3G01120 741 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10039016 [exp] 129 / 6e-33 AT3G57050 688 / 0.0 cystathionine beta-lyase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G084000 [exp] 648 / 0 AT1G64660 689 / 0.0 methionine gamma-lyase (.1) Potri.003G187032 [exp] 289 / 1e-96 AT1G64660 288 / 2e-96 methionine gamma-lyase (.1) Potri.003G146600 [exp] 206 / 1e-63 AT1G64660 239 / 1e-76 methionine gamma-lyase (.1) Potri.017G086500 [exp] 160 / 1e-43 AT3G01120 720 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.016G038200 [exp] 134 / 1e-34 AT3G57050 714 / 0.0 cystathionine beta-lyase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF01053 [flax] [poplar] Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10000880 pacid=23145675 polypeptide=Lus10000880 locus=Lus10000880.g ID=Lus10000880.BGIv1.0 annot-version=v1.0 ATGGCTCCAGCAGAGACAAAGAGTCAGGACATAAGCGTCATCAACTCTTCCACCACCAAGAAAACCAACGAGCTGGACCCGGCCGCTGCGTTAGCTTCGG TCCGCCACGAGTTCGGAGAACATGGCGGCATTAATATGTCCATCGAGGCCTCCGCAGCCTTCACCGTCATCGAGCCAGAGACCATGGGCAGAATGTTCGC AGGCGAGCTCGGTCCTGATGGAGATTTCTTCATCTACAGCCGTCATTTCAACCCTACTGTTCTCAAGCTAAGCCGTCAGATCGCCGCCCTTGAAGGCACC GAGGCTGCCTATTGCACCGCCAGCGGTATGTCAGCGATAGCATCAGTGATTATGCAACTGTGCAACAGCGGGGGAAACGTGGTGGCGTCGAGCAAGCTCT ACGGTGGAACGCATGCACTGTTGAGCCATTTTCTGCCGAGGGCATGCAACATTACTACGTCGTTCGTCGACATAGCCGACTTGGAGGCTGTGGATAGTGC GGTGGTGGAAGGGAAAACCAACGTCCTCTACTTGGAGTCCGTCTCCAACCCAACTCTCACCGTCGCTGATATACCGCAGCTGAGCCGGATTGCTCACGGC AAAGGCGTGAAAGTGGTCGTCGACAACACTTTCTCTCCAATGGTGCTGACTCCGGCCAGGCTCGGTGCTGACGTCGTCGTTCATAGCGTCACCAAGTTCA TCAGCGGTGGTGCTGACATAGTGGCAGGTGCCGTATGTGGGCCGGCTAGCCTGGTGAACTCGATGATGGATCTCCACCAAGGCGCTTTATTACTTCTTGG GCCAACGATGAATCCAAAAGTGGCCTTCGAACTATCCGAAAGAATTCCACACTTGGGCCTGAGGATGAAAGAACACAGCAAAAGGGCAATGGTTTACGCA ACCAGGATGAAGGAATTGGGCCTCAATGTCATTTACCCAGGCTTACCCGACCACCCGCAGCACAGTCTCATCAAATCCATGGCTAACAAGGATTACGGCT TTGGTGGGATGATCGCATTGGACATGGGAACCGAGGACCGGGCGAACCGGTTGATGAACCAGCTTCAGAACACCACTGGGTTCGGGTTAATGGCTGTTAG CTTGGGTTACTACGAGACCCTCATGTCGTGTTCGAGTACCAGCACTAGCAGCGAGCTCAATGAGAAGGAGCTTGAGACTGCTGGGATCTCGTCGGGCTTG ATAAGGATGTCGGTTGGTTATGTCGGGACTTTGGAACAAAAGTGGGAGCAGTTTGAGAAGGCTGTTTCAAAGATGCATGAAATTGAGATTAATGTTTGA
AA sequence Show only first row Show all	>Lus10000880 pacid=23145675 polypeptide=Lus10000880 locus=Lus10000880.g ID=Lus10000880.BGIv1.0 annot-version=v1.0 MAPAETKSQDISVINSSTTKKTNELDPAAALASVRHEFGEHGGINMSIEASAAFTVIEPETMGRMFAGELGPDGDFFIYSRHFNPTVLKLSRQIAALEGT EAAYCTASGMSAIASVIMQLCNSGGNVVASSKLYGGTHALLSHFLPRACNITTSFVDIADLEAVDSAVVEGKTNVLYLESVSNPTLTVADIPQLSRIAHG KGVKVVVDNTFSPMVLTPARLGADVVVHSVTKFISGGADIVAGAVCGPASLVNSMMDLHQGALLLLGPTMNPKVAFELSERIPHLGLRMKEHSKRAMVYA TRMKELGLNVIYPGLPDHPQHSLIKSMANKDYGFGGMIALDMGTEDRANRLMNQLQNTTGFGLMAVSLGYYETLMSCSSTSTSSELNEKELETAGISSGL IRMSVGYVGTLEQKWEQFEKAVSKMHEIEINV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10000880 [exp]	0	1
AT1G70890		MLP43	MLP-like protein 43 (.1)		Lus10012467 [exp]	1.0	0.9198
					Lus10005608 [exp]	1.4	0.9001
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10006821 [exp]	2.4	0.8925
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10023810 [exp]	3.5	0.8186
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10027397 [exp]	4.9	0.7988
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10024728 [exp]	5.5	0.8029
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Lus10026598 [exp]	8.5	0.7746
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Lus10036007 [exp]	11.5	0.6747
					Lus10019580 [exp]	14.1	0.7797
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029332 [exp]	15.7	0.7982

Compare expression of checked genes

Lus10000880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.