Plant FIBer expression Database

Lus10000881 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G64660 572 / 0 ATMGL methionine gamma-lyase (.1)
AT3G01120 155 / 3e-42 AtCGS1, ATCYS1, CGS1, MTO1 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
AT1G33320 135 / 2e-35 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
AT3G57050 114 / 9e-28 CBL cystathionine beta-lyase (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000880
[exp]
652 / 0 AT1G64660 639 / 0.0 methionine gamma-lyase (.1)
Lus10017333
[exp]
613 / 0 AT1G64660 676 / 0.0 methionine gamma-lyase (.1)
Lus10001672
[exp]
503 / 3e-179 AT1G64660 546 / 0.0 methionine gamma-lyase (.1)
Lus10033233
[exp]
444 / 2e-156 AT1G64660 377 / 8e-130 methionine gamma-lyase (.1)
Lus10000074
[exp]
228 / 8e-74 AT1G64660 244 / 2e-80 methionine gamma-lyase (.1)
Lus10001671
[exp]
220 / 1e-70 AT1G64660 242 / 2e-79 methionine gamma-lyase (.1)
Lus10030694
[exp]
145 / 2e-38 AT3G01120 702 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Lus10005226
[exp]
126 / 9e-32 AT3G01120 741 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Lus10027313
[exp]
110 / 3e-26 AT3G57050 683 / 0.0 cystathionine beta-lyase (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G084000
[exp]
589 / 0 AT1G64660 689 / 0.0 methionine gamma-lyase (.1)
Potri.003G187032
[exp]
266 / 4e-88 AT1G64660 288 / 2e-96 methionine gamma-lyase (.1)
Potri.003G146600
[exp]
191 / 5e-58 AT1G64660 239 / 1e-76 methionine gamma-lyase (.1)
Potri.017G086500
[exp]
141 / 5e-37 AT3G01120 720 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Potri.016G038200
[exp]
106 / 6e-25 AT3G57050 714 / 0.0 cystathionine beta-lyase (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0061 PLP_aminotran PF01053 Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme
Representative CDS sequence
>Lus10000881 pacid=23145677 polypeptide=Lus10000881 locus=Lus10000881.g ID=Lus10000881.BGIv1.0 annot-version=v1.0
ATGAGTGCCAACTTTTCCACCACGAAAAAAACATGTGAACTGGATCCCGCTGCCATGTTAGCTTCCGTCCGCCACGAGTTCGGCGAACACGGCGGCGTTA
ACATGTCCATCGAGGCCTCCGCCACCTTCACCGTCATGGAGTCCAACATCATGATCCGAATGTTCGCCGGGGAGCTAGGACCCGACGATGGCGATTTCTT
CATCTACAGCCGTCATTTCAACCCAACTGTCCTCAATCTCAGCCGTCAGATTGCCGCCCTTGAAGGCACCGAGGCCGCGTATTGCACCGCAAGCGGACAT
GTGGTCGCATCGAGCAAGCTGTACGGTGGCACGCATGCACTGTTGAGTCATTTTCTGCCAAGGGCATGCAACATTACAACTTCGTTTGTCGACATACTCG
ACTTGGAGGCAGTGGAGAGAGCTGTGGTGGAAGGGAAGACCAATGTCTTGTACTTCGAGTCCATCTCCAACCCAACTCTCACCGTCGCTGATATCCCCGA
GCTCAGTCGGATCGCTCACAAGAAAGGCGTGAAGGTGGTCGTTGACAACACTTTCGCTCCGATGGTGCTGACTCCGGCAAGGTTCGGCGCTGATGTCCTC
GTCCATAGCGTTACCAAGTTCATCAGCGGCGGCAATGACATAATTGCCGGTGCTGTGTGCGGGCCTGCAAGCTTTGTGAACTCAATGATGGACCTCCATC
AAGGGGCTTTCCTTCTACTTGGGCCGACAATGCATCCAACAGTAGCATTCGAACTATCACAGAGGATTCCTCACTTGGGCCTGAGGATAAAAGAGCACAG
CAACAGAGCGTTGGTCTACGCCACCAGGATGAAGAAACTGGGCCTAAAGGTGATATACCCGGGCCTGGTGGACCACCCACAACACGGCCTGCTGAAGTCC
ATGGCTAATAAGGATTACGGCTTTGGTGGGATGCTCTCACTAGACATGGGAACCAAGGAACGGGCGGACCGGTTGATGAACCAGCTCCAGAACGTCACTC
ATTTCGGGTTCATGGCGGTTAGCTTGGGTTATTACGAGACTATCATGTCTTGCTCCGGTAGTAGCACCAGTAGTGAACTCACCGATGAGGAGCTCAAGAA
CGCTGAGATCTCGCCGGGGCTGGTGAGGGTGTCGGTTGGTTACGTGGGGACTTTGGAGCAGAAGTGGAACCAGTTCGAGAAGGCCATTTCTTTCTAG
AA sequence
>Lus10000881 pacid=23145677 polypeptide=Lus10000881 locus=Lus10000881.g ID=Lus10000881.BGIv1.0 annot-version=v1.0
MSANFSTTKKTCELDPAAMLASVRHEFGEHGGVNMSIEASATFTVMESNIMIRMFAGELGPDDGDFFIYSRHFNPTVLNLSRQIAALEGTEAAYCTASGH
VVASSKLYGGTHALLSHFLPRACNITTSFVDILDLEAVERAVVEGKTNVLYFESISNPTLTVADIPELSRIAHKKGVKVVVDNTFAPMVLTPARFGADVL
VHSVTKFISGGNDIIAGAVCGPASFVNSMMDLHQGAFLLLGPTMHPTVAFELSQRIPHLGLRIKEHSNRALVYATRMKKLGLKVIYPGLVDHPQHGLLKS
MANKDYGFGGMLSLDMGTKERADRLMNQLQNVTHFGFMAVSLGYYETIMSCSGSSTSSELTDEELKNAEISPGLVRVSVGYVGTLEQKWNQFEKAISF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G64660 ATMGL methionine gamma-lyase (.1) Lus10000881
[exp]
0 1

Lus10000881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.