Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21610 203 / 7e-68 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) AT1G67600 177 / 1e-57 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) AT1G24350 172 / 2e-55 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2.3) AT3G61770 100 / 2e-26 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) AT3G12685 67 / 3e-14 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003670 [exp] 296 / 4e-104 AT3G21610 219 / 1e-73 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10035299 [exp] 190 / 3e-62 AT3G21610 275 / 1e-95 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10030025 [exp] 183 / 6e-59 AT3G21610 243 / 6e-82 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10011373 [exp] 163 / 6e-52 AT1G67600 245 / 2e-84 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10006432 [exp] 162 / 1e-51 AT1G67600 245 / 3e-84 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10036984 [exp] 125 / 8e-38 AT1G24350 185 / 2e-61 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2.3) Lus10030253 [exp] 98 / 1e-26 AT3G61770 245 / 5e-83 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10001756 [exp] 66 / 5e-13 AT3G12685 206 / 2e-66 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10001841 [exp] 65 / 5e-13 AT3G12685 206 / 2e-66 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G087100 [exp] 247 / 5e-85 AT3G21610 204 / 9e-68 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.002G226900 [exp] 176 / 6e-57 AT3G21610 218 / 2e-73 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.010G056600 [exp] 176 / 8e-57 AT1G67600 254 / 8e-88 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Potri.014G156000 [exp] 171 / 7e-55 AT3G21610 184 / 5e-60 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.002G171300 [exp] 104 / 9e-28 AT3G61770 331 / 3e-114 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Potri.010G176100 [exp] 56 / 6e-10 AT3G12685 193 / 2e-61 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [flax] [poplar] pap2 PF02681 [flax] [poplar] DUF212 Divergent PAP2 family
Representative CDS sequence Show only first row Show all	>Lus10000883 pacid=23162082 polypeptide=Lus10000883 locus=Lus10000883.g ID=Lus10000883.BGIv1.0 annot-version=v1.0 ATGAACGAAGTCATCACAGCTGCTGATGTATCAGCGAGGTTCCGATCAGCCGCATCTCAGCCCTCCATCATCCCTTCTAATGTCCCACTCGTCACCGCCT TCCTCGCATTAGCTATCGCCCAGTTCCTCAAACCTTTTACCGTCTGGTTTAAGGAGAGAAGATGGGATTCTCGAAGGATGCTTGGATCTGGTGGAATGCC CTCCTCACATTCCGCAACAGTGACAGCACTTGCTGTGGCTATTGCACTGCAGGAAGGAACTGGGGCACCAACTTTTGCTGTTGCATTGGTTTTGGCTTGC GTTGTTATGTATGATGCTACTGGTGTTAGACTTCATGCTGGCCGGCAGGCTGAGTTATTGAATCAAATAGTGTGCGAGCTGCCTCCTGAACATCCTGTCT CCAATTGTAGACCACTTCGGGATAGCCTTGGTCATACTCCCATCCAGGTTTGTTGCGCTCTCACTGTTCCCGATTTGAAGTAA
AA sequence Show only first row Show all	>Lus10000883 pacid=23162082 polypeptide=Lus10000883 locus=Lus10000883.g ID=Lus10000883.BGIv1.0 annot-version=v1.0 MNEVITAADVSARFRSAASQPSIIPSNVPLVTAFLALAIAQFLKPFTVWFKERRWDSRRMLGSGGMPSSHSATVTALAVAIALQEGTGAPTFAVALVLAC VVMYDATGVRLHAGRQAELLNQIVCELPPEHPVSNCRPLRDSLGHTPIQVCCALTVPDLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10000883 [exp]	0	1
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10029591 [exp]	4.9	0.8759
AT2G45010			PLAC8 family protein (.1.2)		Lus10038926 [exp]	7.1	0.8585
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10020512 [exp]	7.1	0.8367
AT4G28610	GARP	ATPHR1, PHR1	phosphate starvation response ...		Lus10022886 [exp]	8.7	0.8275
AT5G14540			Protein of unknown function (D...		Lus10032138 [exp]	8.9	0.8633
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10013966 [exp]	12.2	0.8057
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10035827 [exp]	13.3	0.8530
AT5G49610			F-box family protein (.1)		Lus10028682 [exp]	18.3	0.8479
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10013486 [exp]	19.0	0.8260
AT5G07270		XBAT33	XB3 ortholog 3 in Arabidopsis ...		Lus10027441 [exp]	19.3	0.8037

Compare expression of checked genes

Lus10000883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.