Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14000 437 / 1e-153 ATBRXL2, BRX-LIKE2 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) AT1G54180 429 / 5e-151 ATBRXL3, BRX-LIKE3 ARABIDOPSIS THALIANA BREVIS RADIX-LIKE 3, BREVIS RADIX-like 3 (.1.2) AT5G20540 369 / 8e-127 ATBRXL4, BRX-LIKE4 BREVIS RADIX-like 4 (.1) AT1G31880 261 / 6e-85 BRX, NIP3;1, NLM9 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) AT2G35600 251 / 3e-81 BRXL1, ATBRXL1, BRX-LIKE1 ARABIDOPSIS THALIANA BREVIS RADIX LIKE 1, BREVIS RADIX-like 1 (.1) AT2G21030 108 / 3e-28 unknown protein AT5G12350 89 / 8e-19 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 86 / 4e-18 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT1G69710 85 / 1e-17 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G65920 68 / 4e-12 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008459 [exp] 674 / 0 AT3G14000 441 / 1e-155 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) Lus10017164 [exp] 336 / 8e-114 AT5G20540 457 / 1e-161 BREVIS RADIX-like 4 (.1) Lus10021565 [exp] 320 / 3e-107 AT5G20540 420 / 1e-146 BREVIS RADIX-like 4 (.1) Lus10030349 [exp] 244 / 1e-78 AT1G31880 410 / 5e-144 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) Lus10007898 [exp] 218 / 4e-69 AT1G31880 363 / 1e-126 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) Lus10036030 [exp] 89 / 4e-19 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10009701 [exp] 88 / 1e-18 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10018904 [exp] 86 / 5e-18 AT1G76950 1520 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10028600 [exp] 84 / 3e-17 AT1G76950 1516 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G170800 [exp] 474 / 4e-168 AT3G14000 467 / 2e-165 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) Potri.003G063200 [exp] 459 / 3e-162 AT3G14000 492 / 4e-175 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) Potri.006G144900 [exp] 413 / 9e-144 AT5G20540 422 / 2e-147 BREVIS RADIX-like 4 (.1) Potri.018G064900 [exp] 385 / 3e-133 AT5G20540 426 / 1e-148 BREVIS RADIX-like 4 (.1) Potri.001G131800 [exp] 298 / 6e-99 AT1G31880 462 / 4e-164 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) Potri.003G101500 [exp] 282 / 7e-93 AT1G31880 434 / 8e-153 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) Potri.001G026900 [exp] 89 / 7e-19 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 85 / 1e-17 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.T124906 [exp] 85 / 1e-17 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.005G190000 [exp] 84 / 3e-17 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08381 [flax] [poplar] BRX Transcription factor regulating root and shoot growth via Pin3
Representative CDS sequence Show only first row Show all	>Lus10000884 pacid=23150242 polypeptide=Lus10000884 locus=Lus10000884.g ID=Lus10000884.BGIv1.0 annot-version=v1.0 ATGCTGACGTGTATAGCTTGTTCAAAGCAGCTTAATGGCGGAAACAATGGATCTATTGAACAGAGAAGGGAGAGGGATGATAATGATTTTGACGACGAAT ATGCTACGGAGACGCCCAGGACGAAGCAGGCTATTAGGAATCTGACTTCTCAGATAAAAGACATGGCGTTAAAGGCATCAGGAGCATACAAAAATTGCAA GCCGTGCTCTGGGTCGTCTAACAATAATAAGCAAGATGGCGAGTCCGATGATGTCTCAGATTCGGGCAGGTTCCAATGTTCGTACCGTAGGACGAGCAAT TCGGAGATGGAATCAAGGCTAAAAGGTGGGATGTCAAGTGGTGAAGGGACACCTGCATCTGGCAGCGGTAGGACGGAATCTGTGGGGTTCACGGAGGATG ATGAACCTAAGGAGTGGGTTGCACAAGTGGAACCTGGCGTCCTCATCACTTTTGTTTCCTTACCTGAGGGTGGCAATGATCTTAAGAGGATTCGATTCAG CCGCGAAATGTTCAACAAATTGCAAGCTCAAAGATGGTGGGCAGAGAACTATGACAAGGTAATGGAGCTTTACAACGTTCAACAGTTCAATCAGCAAGCA GTCCCATTTCCAACCCCTTCAAGATCGGAGGATGAGAATCCAAACCCTGGATCTGCAAAAGAGAGCCCCATGACTCCACCACTAGACAAAGAACGGCCTT GCAAATCTCGTCGTCCAAAAGGAATTAGCCACTCCTCTGAACACCAAACGATGCAATCGTGGAAATACTGTGACAGCCCAGGGGGCGGCCTTGCTTCAAC ACCAAAGCTGTCTGACATGAGTGGAGTAAAAACAGAAACATCATCAATTGATGTTTCTGCTAGGACGAGTTTATCCTCGAGAGAAGTAGATCACTCAGGA GAGATGTCGCCGAGCAACGGAAGTGAAACAGAATCTGAATGGGTGGAGCAGGACGAACCAGGAGTGTACATCACAGTCAGAGCACTACCAGGTGGAGCAA GGGAACTTAGGCGCATCAGATTTAGCCGAGAAATGTTTGGAGAAATGCAAGCAAGGGTGTGGTGGGAAGAGAACAAGATCAGGATCCAACAACTTTACTT GTGA
AA sequence Show only first row Show all	>Lus10000884 pacid=23150242 polypeptide=Lus10000884 locus=Lus10000884.g ID=Lus10000884.BGIv1.0 annot-version=v1.0 MLTCIACSKQLNGGNNGSIEQRRERDDNDFDDEYATETPRTKQAIRNLTSQIKDMALKASGAYKNCKPCSGSSNNNKQDGESDDVSDSGRFQCSYRRTSN SEMESRLKGGMSSGEGTPASGSGRTESVGFTEDDEPKEWVAQVEPGVLITFVSLPEGGNDLKRIRFSREMFNKLQAQRWWAENYDKVMELYNVQQFNQQA VPFPTPSRSEDENPNPGSAKESPMTPPLDKERPCKSRRPKGISHSSEHQTMQSWKYCDSPGGGLASTPKLSDMSGVKTETSSIDVSARTSLSSREVDHSG EMSPSNGSETESEWVEQDEPGVYITVRALPGGARELRRIRFSREMFGEMQARVWWEENKIRIQQLYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14000		ATBRXL2, BRX-LI...	DZC (Disease resistance/zinc f...		Lus10000884 [exp]	0	1
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Lus10009236 [exp]	8.6	0.8479
AT3G03770			Leucine-rich repeat protein ki...		Lus10034873 [exp]	11.7	0.8115
AT1G53390		ABCG24	ATP-binding cassette G24, P-lo...		Lus10038714 [exp]	11.7	0.8036
AT3G28040			Leucine-rich receptor-like pro...		Lus10037276 [exp]	17.7	0.8325
AT5G38530		TSBtype2	tryptophan synthase beta type ...		Lus10000306 [exp]	18.2	0.7359
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034846 [exp]	19.4	0.8337
AT5G22120			unknown protein		Lus10008366 [exp]	22.7	0.7933
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Lus10031929 [exp]	26.5	0.7335
AT3G51870			Mitochondrial substrate carrie...		Lus10004820 [exp]	41.0	0.7974
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10023884 [exp]	44.5	0.7912

Compare expression of checked genes

Lus10000884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.