Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17600 76 / 2e-17 RING/U-box superfamily protein (.1) AT2G20030 72 / 4e-16 RING/U-box superfamily protein (.1) AT3G03550 72 / 5e-16 RING/U-box superfamily protein (.1) AT1G72220 72 / 6e-16 RING/U-box superfamily protein (.1) AT3G16720 70 / 3e-15 ATL2 TOXICOS EN LEVADURA 2 (.1) AT4G28890 69 / 7e-15 RING/U-box superfamily protein (.1) AT5G10380 68 / 1e-14 ATRING1, RING1 RING/U-box superfamily protein (.1) AT3G18930 68 / 2e-14 RING/U-box superfamily protein (.1.2) AT1G53820 67 / 2e-14 RING/U-box superfamily protein (.1) AT4G33565 67 / 3e-14 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008458 [exp] 126 / 1e-38 AT5G17600 80 / 2e-18 RING/U-box superfamily protein (.1) Lus10013618 [exp] 76 / 2e-17 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10012745 [exp] 72 / 4e-16 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10005954 [exp] 72 / 9e-16 AT3G04020 111 / 7e-28 unknown protein Lus10034953 [exp] 71 / 2e-15 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10012975 [exp] 71 / 2e-15 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10029456 [exp] 66 / 3e-15 AT5G10380 86 / 3e-21 RING/U-box superfamily protein (.1) Lus10006493 [exp] 69 / 6e-15 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10000710 [exp] 69 / 9e-15 AT1G04360 155 / 3e-44 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G144200 [exp] 78 / 5e-19 AT5G17600 90 / 3e-21 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 78 / 4e-18 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.007G097500 [exp] 76 / 2e-17 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1) Potri.003G093100 [exp] 72 / 4e-16 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 72 / 8e-16 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 71 / 1e-15 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.008G219200 [exp] 71 / 1e-15 AT3G16720 197 / 2e-61 TOXICOS EN LEVADURA 2 (.1) Potri.007G111900 [exp] 71 / 1e-15 AT4G33565 163 / 1e-46 RING/U-box superfamily protein (.1) Potri.017G049300 [exp] 70 / 3e-15 AT4G33565 166 / 6e-48 RING/U-box superfamily protein (.1) Potri.002G101800 [exp] 70 / 3e-15 AT1G72220 195 / 3e-58 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10000885 pacid=23150243 polypeptide=Lus10000885 locus=Lus10000885.g ID=Lus10000885.BGIv1.0 annot-version=v1.0 ATGATCCTGGCAGAAAGAACAGACACGTTCTTTGTCACAGGATCATTTGCAGTTTCGACATTCCAGTATAATGAGAAAGAAAATGAGAATGAAGAAGAAG AAGAAGAAGAAGAAGATAGTAGAGAAGCTGCAGCAGCTTGTTGTGCAGTGTGCTTGTCAAGTTTTGAAGAGTTGGAGTACATACGGTTGCTTCCAACCTG CAACCACTCTTTCCACCTACCTTGTATCGATATGTGGCTCTACTCTCATCTTTACTGCCCTCTTTGCCGCACAAGTGTCAACACTTTGGAACTTGAAACC GAGTCCAAGCCCACAATACCCATGCTAAGTTGCTAG
AA sequence Show only first row Show all	>Lus10000885 pacid=23150243 polypeptide=Lus10000885 locus=Lus10000885.g ID=Lus10000885.BGIv1.0 annot-version=v1.0 MILAERTDTFFVTGSFAVSTFQYNEKENENEEEEEEEEDSREAAAACCAVCLSSFEELEYIRLLPTCNHSFHLPCIDMWLYSHLYCPLCRTSVNTLELET ESKPTIPMLSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20030			RING/U-box superfamily protein...		Lus10000885 [exp]	0	1
AT5G44440			FAD-binding Berberine family p...		Lus10010643 [exp]	4.1	0.9203
AT3G54940			Papain family cysteine proteas...		Lus10037951 [exp]	6.2	0.7347
AT5G02920			F-box/RNI-like superfamily pro...		Lus10035325 [exp]	6.8	0.9106
AT4G01310			Ribosomal L5P family protein (...		Lus10036391 [exp]	8.3	0.9055
AT3G55210	NAC	ANAC063	NAC domain containing protein ...		Lus10031639 [exp]	9.6	0.8914
AT5G48540			receptor-like protein kinase-r...		Lus10035754 [exp]	10.0	0.7861
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	11.0	0.8840
					Lus10008791 [exp]	12.0	0.8840
					Lus10021851 [exp]	13.0	0.8840
AT5G50300		ATAZG2	ARABIDOPSIS THALIANA AZA-GUANI...		Lus10034287 [exp]	13.5	0.7842

Compare expression of checked genes

Lus10000885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.